Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e21
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1377 - 33064906-33065607 29 1.5
04_04_0082 - 22603038-22603472,22603561-22604499 29 1.5
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 29 2.6
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 29 2.6
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 29 2.6
06_03_0806 + 24788441-24789049 28 3.4
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 28 3.4
03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325 28 4.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 4.5
11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222... 27 5.9
08_01_0888 + 8719416-8719720,8719747-8720482 27 5.9
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 27 5.9
03_04_0242 - 19238016-19238679,19239487-19239929 27 5.9
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 27 5.9
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 27 7.8
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37... 27 7.8
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 27 7.8
03_04_0209 + 18581667-18582155 27 7.8
01_06_1464 + 37537218-37537387,37537738-37537897,37539521-375397... 27 7.8
>04_04_1377 - 33064906-33065607
Length = 233
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 181 IGSDVSGVNLNVKVAVVTGHFEVEAQHRHDHH 86
+GS V + + VA T H E + H H HH
Sbjct: 156 VGSRVDALQTGMMVAPTTHHRERQKHHHHHHH 187
>04_04_0082 - 22603038-22603472,22603561-22604499
Length = 457
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 84 P*WSWRCWASTSKWPVTTATFTLRFTPDTSDPISSIILRKYDLTPRLIWRTTTK 245
P W WR + +P F PDT P S ++ K+DL + R K
Sbjct: 146 PVWGWRLSLGLAAFPAAVMVAGAAFIPDT--PSSLVLRGKHDLARAALQRVRGK 197
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 295 NIFGCDLQRSGSR--RLHNAFTRPKRRAVIRYRHNQDKLSVW 414
N+ C LQR+ + LHN FTR +R + + N S W
Sbjct: 220 NLSNCSLQRADQKLTHLHNNFTRLERLDLSGNQFNHPAASCW 261
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 245 SATHPAWQYWRQIGRTGISSVATYKDQDPDGSIMRSLGQNEELLSDI--DIIKI 400
+A P W+ R G+ G++ V K+ PDG G+ ++ +I DI+ I
Sbjct: 39 AAPPPRWRPTRCRGKPGVTEVVAEKETSPDGEEEEVRGRGWFMVDEIGMDILTI 92
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 216 PRLIWRTTTKAPHTRPGSTGGK 281
PR +WR K P P TGGK
Sbjct: 361 PRKVWREKPKTPAPAPPETGGK 382
>06_03_0806 + 24788441-24789049
Length = 202
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 229 QIKRGVRSYFLKMMELIGSDVSGVNLNVKVAVVTGHFEVEAQHRHDHHGGV 77
++ R + YFL + ++G +SGV++ + A+ RH GGV
Sbjct: 81 ELLRPGQIYFLLPVSMLGRPLSGVDMAALAVRASDALVARARPRHQRGGGV 131
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -3
Query: 356 LVNALWSRRDPDLCRSQPKIFRSCLFASSTARPGVWRFCSRT 231
LV A D DLC S P S + SSTA V R CS T
Sbjct: 130 LVGANLLPNDDDLCPSTPLSPMSSVSCSSTASTLVTRSCSLT 171
>03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325
Length = 123
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 308 ATYKDQDPDGSIMRSLGQNEELLSDID 388
ATY D PDG++ +++ Q +L S +D
Sbjct: 97 ATYPDAFPDGAMAKTMDQRPDLESPLD 123
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 105 SIAMTIMAVCCRCWPPRSSSML 40
S +T++A CR WPPR+ +++
Sbjct: 67 SYLVTVLAQSCREWPPRNETLV 88
>11_04_0471 -
18121023-18121213,18121954-18122080,18122221-18122253,
18122969-18123009,18123415-18123484,18123626-18123744,
18123876-18123942,18124735-18124809,18125023-18125050,
18125130-18125179,18125679-18125741,18125829-18125870,
18126000-18126078,18127233-18127368,18128013-18128517,
18129238-18129372
Length = 586
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 49 AAARRPTSTAHRHDGHGDAGL 111
A A RP+S R +G+GDAG+
Sbjct: 123 AVAARPSSRRSRREGNGDAGV 143
>08_01_0888 + 8719416-8719720,8719747-8720482
Length = 346
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 216 PRLIWRTTTKAPHTRPGSTGGK 281
P+ +WR K P P TGGK
Sbjct: 322 PKKVWREKPKTPAPSPPETGGK 343
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 216 PRLIWRTTTKAPHTRPGSTGGK 281
P+ +WR K P P TGGK
Sbjct: 473 PKKVWRKKPKTPTPSPPETGGK 494
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 216 PRLIWRTTTKAPHTRPGSTGGK 281
PR +W+ K P P TGGK
Sbjct: 344 PRKVWKEKPKTPAPSPPKTGGK 365
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 217 GVRSYFLKMMELIGSDVSGVNLNVKVAVVTGHF 119
G+ YF+K++ I +D+ G +N VT HF
Sbjct: 298 GMYQYFVKVVPTIYTDIRGRKINSNQFSVTEHF 330
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -1
Query: 313 GRNRRYSGPAYLPPVLPGRV---CGAFVVV 233
GR R+ P+Y+P +PG V CG VV
Sbjct: 58 GRMTRHEVPSYVPDYVPGEVITNCGVMKVV 87
>12_01_0046 -
373974-374188,374298-374580,374698-374764,375705-375889
Length = 249
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 134 DRDLYIKVHPRHIRPDKLHHFEKIRPDATFD 226
+RD +I +H R+ LHH+ PD FD
Sbjct: 63 ERDFFIIIHVRYA----LHHYNAKHPDEEFD 89
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 74 QHTAMMVMAMLGFYFEVARHDRDLYIK 154
+HT ++ +L F+FEV HD ++ +K
Sbjct: 856 RHTPVIEKLILEFFFEVTEHDDEVEMK 882
>03_04_0209 + 18581667-18582155
Length = 162
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 216 PRLIWRTTTKAPHTRPGSTGGK 281
PR +W+ K P P TGGK
Sbjct: 138 PRNVWKEKPKTPAPSPPETGGK 159
>01_06_1464 +
37537218-37537387,37537738-37537897,37539521-37539787,
37540541-37540646,37541411-37541678,37541915-37542020,
37542891-37542950,37544349-37544445,37544613-37544803,
37545518-37545583,37545879-37545944,37547510-37547583,
37547910-37548000,37548079-37548236,37548424-37548466,
37548621-37548686,37549113-37549190,37549361-37549453
Length = 719
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 250 GAFVVVRQIKRGVRSYFLKMMELIGSDVSGV 158
G F VVR+ + G FL M EL VSGV
Sbjct: 310 GKFEVVREKEDGGNKTFLSMEELTADYVSGV 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,277
Number of Sequences: 37544
Number of extensions: 335387
Number of successful extensions: 1079
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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