Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e19
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.95
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.7
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 2.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.8
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 5.1
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 6.7
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 6.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 8.8
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.95
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 395 SPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFSGIFGFRHPTAAMKYFPSLISH 234
S F+STT +++ +ST SSS + S+ S P ++ + SL SH
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 190 PWQEWSDHYTCHRYRCEIRDG 252
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 594 AANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAAHSDNSRIWLVLL 457
AA I C+S +K L +G ++ CLL S +S I L LL
Sbjct: 345 AALIFQFGCNSTIKVPISLLVIGQVSNICLLGIRPSTDSEIVLGLL 390
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +1
Query: 385 VNGERIVQTRGQPGEL--FPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGIFN 558
VNG + G G + +P P + P P GM+ P G P PG
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRP--MMMPGSVP 552
Query: 559 SRGAADGSDI 588
S G A+ +
Sbjct: 553 SAGPAEAEAV 562
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 440 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 297
S +SSP T SP +S++ + + +S+ SSS S SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -2
Query: 360 TARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVS 244
T +GE D+ + + V++ +W + ++ +FPV+
Sbjct: 229 TEQGELSFKKGDIILVLESVYKDWWKGSCKNAVGIFPVN 267
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = -1
Query: 571 LLLCC*IFQETPDPGARHRPVSAGCRSFRQQQDLARFVGPSMVYRGTVRQAALWFALFSL 392
LL C I+ E P ++ R + GC + RF+ + LFS+
Sbjct: 52 LLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSI 111
Query: 391 HLLRRRNAIAHS 356
+ R + HS
Sbjct: 112 EKVTRSESKNHS 123
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 274 GCRKPKIPENALECHEYIEDEN 339
G K IP+N EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 427 ELFPDKPWKGQQNEPNPAVVGMSG 498
+ F WK Q NE NP +GM G
Sbjct: 337 DFFTSDEWKNQVNESNP--LGMGG 358
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 3 LRNSLKKQGVLTFSYYGWRPENT 71
+R+ ++ GVL +YGW+PEN+
Sbjct: 570 VRSKGQEDGVL---FYGWKPENS 589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,997
Number of Sequences: 5004
Number of extensions: 59747
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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