Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19e18
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    31   0.20 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    30   0.26 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   5.7  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.9  

>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = -2

Query: 592 LWNVRSDKKKYSQQFYVQE----CHLYTHSNQVSLTILYTPEH---LSCSSQLH*KVFLL 434
           LW++++DKK   +   V++      L +HS  V  T  ++P++   LSCS     +++ +
Sbjct: 350 LWSIKADKKSLPKSTSVEDSDGSVRLLSHSGPVYGT-TFSPDNKYLLSCSEDASARLWSV 408

Query: 433 DMKVDLIHHK 404
           D K  L+ +K
Sbjct: 409 DTKTALVAYK 418


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +1

Query: 265 LIVKHIPKLSKQPKHLVVL----SDSDYHS-IDDLARMVIWSLVAGIPFLSFYDVSGQLS 429
           LI +   KL K+PKH+ V+     D      I D   +  W + + I  L+ Y+  G L 
Sbjct: 48  LIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLK 107

Query: 430 YQEEKLFNAV 459
              E +  A+
Sbjct: 108 QSPEAVEKAI 117


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 530  FVYPFKSGFFDHFIHPGTP 474
            FV   K  F+ HF+H G P
Sbjct: 1511 FVQDIKKSFYKHFLHSGFP 1529


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 223 HSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDS 330
           H   +   T + L+ + ++IP +SKQP +L + S S
Sbjct: 537 HKSTNSSATFSRLEELGENIPAISKQPSYLSISSSS 572


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 576 ERTFHNYTMYQRKCVRKKFHIIEKSDQITAQE 671
           E  FHN  +   +  RK    +EKS+Q+ A +
Sbjct: 48  EDGFHNSGIGSARLRRKNISFVEKSEQVKANK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,710
Number of Sequences: 5004
Number of extensions: 53314
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)