Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19e18
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    31   0.56 
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine r...    30   1.3  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83123-7|CAB05612.2|  332|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    29   3.0  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    29   4.0  
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    29   4.0  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 641 YYMEFFPHTFSLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFFDHFIHPGTPF 471
           Y    FP   S +  V++  P  QEKI   IL + +PF  +YP    FF  F+ P   +
Sbjct: 124 YANMIFPFLVSTMRLVLIAYPQRQEKINRVILKSALPFILIYPM---FFTFFMWPAVGY 179


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 NGIPAHKIVVNIFSCQNGRSTITQCIKENV*GKNSI 636
           NG+ A      + SCQNGR  I +C    V  +NS+
Sbjct: 315 NGLYALDCTPRVLSCQNGRENIFECPPSLVFNENSL 350


>AF024503-12|AAG24092.2|  329|Caenorhabditis elegans Serpentine
           receptor, class u protein25 protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 641 YYMEFFPHTFSLIHCVIVERPF*QEKIFTTILCAGMP--FVYPFKSGFFDHFIHPGTPF 471
           Y +  FP   +L+   ++  P    KI  TIL   +P  F+YPF   FF  F+  G+ +
Sbjct: 122 YSLMLFPFLVALLRLNLIVFPSQHRKINETILKISIPIVFIYPF---FFTFFMFTGSGY 177


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 232 QDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSD 333
           Q  E+ K DLKLI++H   + +Q KH +V  D+D
Sbjct: 85  QCLELVKEDLKLIMEHHNVVIEQFKHEIVDDDND 118


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
 Frame = -2

Query: 517 SNQVSLTILYTPEHLSCS-SQLH*KVFLL---DMKVDLIHHKNLK-TVFRLLNSIS 365
           SNQ+  T+L     LSC  + +   VF L   D+K++LIHH+++K T    L+S++
Sbjct: 36  SNQIFATLLNNRFLLSCELNDIKGLVFNLTDVDLKMNLIHHESMKMTKSHCLDSLA 91


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 647 FFYYMEFFPHTFSLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFF 501
           F Y    FP    ++  +I+  P   ++I T I+   +PF  VYP  S FF
Sbjct: 124 FNYSAMIFPCLLPIVRLIILTFPKDHDRINTIIMRVAIPFAIVYPIFSTFF 174


>Z83123-7|CAB05612.2|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.9 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 653 VTFFYYMEFFPHTFSLIHCVIVERPF*QEKIFTTILCAGMPFVYPFKSGFFDHFIHP 483
           + F Y +  +P   +++    ++ P    +I + IL  G+PFV+ +   FF  F+ P
Sbjct: 122 IYFSYALMIYPVLLTIVRITPIQLPHRHREINSKILAYGIPFVHIYPL-FFIFFMVP 177


>AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical
           protein F57E7.2 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 208 YWLKKHSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSDYHSIDDLARMVIW 372
           +W  + ++ DY V K D ++    + K S   KHL+   +S   ++  +A +  W
Sbjct: 43  FWYNRSAMSDYSVPKLDSEVQYLIVVKNSSLTKHLIRKLESYNWTLPAIATLDKW 97


>AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical
           protein R52.8 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -3

Query: 630 IFSSHIFFDTLCNCGTSVLTRKNIHNNFMCRNAICIPIQI 511
           +FS ++  + +C+  T+ +T  N+ NN++  +   +  Q+
Sbjct: 181 VFSGNVIDEPICHGTTTFITWDNLENNYIVNDTFIVEAQV 220


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 641 YYMEFFPHTFSLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFFDHFIHPGTPF 471
           Y    FP   S +  V++  P  Q KI   IL + +PF  +YP    FF  F+ P   +
Sbjct: 126 YANMIFPFLVSTMRLVLIAYPQRQGKINRVILKSALPFISIYPI---FFTFFLWPAVGY 181


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 487 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 371
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 270 TKEHLSLALSLHVPVYLVVTKIDMCPAYILEETMKNITRLVRS 312


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 487 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 371
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 269 TKEHLSLALSLHVPVYLVVTKIDMCPANILEETMKNITRLVRS 311


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 385 GIPFLSFYDVSGQLSYQEEKLFNAVE---KNKKGVPGCIKWSKKPDLNGYTNGIPAHKIV 555
           GIP++      G+L +++ +L  + E   + K   P C+ + +K   NG+   I    + 
Sbjct: 49  GIPYVE--PPIGELRFRKPRLLKSWEGVLETKDYKPACMSYWRKTFKNGFVGEISEDCLY 106

Query: 556 VNIFSCQ 576
            N+F+ Q
Sbjct: 107 ANVFTNQ 113


>AL021487-6|CAA16361.2|  325|Caenorhabditis elegans Hypothetical
           protein Y45F10B.11 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 650 TFFYYMEF-FPHTFSLIHCVIVERPF*QEKIFTTILCAGMPFVYPFKSGFFDHFIHPGTP 474
           T+F Y  + FP   + +  V +  PF Q+++   I    +PF+Y +   FF   + P   
Sbjct: 118 TYFTYTGWIFPFLLTTLRLVSLYYPFNQDELCARITQLSIPFIYIWPL-FFTFTLFPALG 176

Query: 473 F 471
           F
Sbjct: 177 F 177


>Z78200-2|CAB01578.1|  588|Caenorhabditis elegans Hypothetical
           protein T04H1.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 487 TPEHLSCSSQLH*KVFLLDMKVDLIHHKNLKTVFRLLNSI 368
           T EHL   + L+  +F+L  K+DL+  + LK + + ++++
Sbjct: 292 TREHLGLIAALNIPMFVLITKMDLVDRQGLKKIIKDVSNL 331


>AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37F4.6 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 185 PTIKFKIKCSKANKNCRSNRDSIIHI--KLLSAT 90
           PTI + +KC++  KNCR  R  +I +  KL+  T
Sbjct: 247 PTILYCVKCNR--KNCRFQRTRLIELIPKLIQVT 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,070
Number of Sequences: 27780
Number of extensions: 298489
Number of successful extensions: 896
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)