Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e17
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 29 0.77
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 1.4
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 27 2.4
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 26 4.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 26 4.1
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 26 5.5
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 26 5.5
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 9.5
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 28.7 bits (61), Expect = 0.77
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Frame = +1
Query: 232 LHALEEEQEILSSSVFSLTSHLAQVEFRLRQILKAPPEEKDA------MLKALEEFTSRG 393
L L++E + L + S + +E+ +RQ + EE+ + + K LEE +++G
Sbjct: 427 LEQLQQENQQLRMLLADADSEMMNLEYEIRQQMTREMEERVSEVERTFLTKLLEE-SAQG 485
Query: 394 VSDTRAAPQGSSGEGACSECLQLERKIRRQRSKQ-THFIERLKSQL--IELERFAANPAT 564
+ T Q G + LQ E + + Q IE L +L +E E + AT
Sbjct: 486 IEYT---DQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEESIKESSAT 542
Query: 565 -LNDGKHRNFIEHLKSEIDQSLEE 633
N+ +H+ L E Q+++E
Sbjct: 543 QQNENQHKRSSRKLLYEDKQAIQE 566
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 232 LHALEEEQEILSSSVFSLTSHLAQVEFRLRQILKAPPEEKDAMLKALEEFTSRGVSDTRA 411
L+ L E+ E L +S+ +H + V L+ + ++K L +++EFTS+ +SD
Sbjct: 1526 LNLLLEDDENLDNSLVLKKTHPSIVYANLKFLWAV--DDKRKALNSMQEFTSQLISDINV 1583
Query: 412 AP 417
P
Sbjct: 1584 DP 1585
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 106 KMESNSDNENEIPIWQEPRCEPLGAPKEICDENESEQNSGDRLHALEEEQEILSSSVFSL 285
KM N+ N E+ + + P G K DENE ++ + + ++E +SS L
Sbjct: 71 KMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKDKEN------KKSKKETVSSPAEQL 124
Query: 286 TSHLAQVEFRLRQILK 333
+ E L ++LK
Sbjct: 125 LALTQNQEISLYKLLK 140
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 FLRDVFPILTLVSSLAKIDDTMLCLH 82
+ D+F LTL A IDDT+ C+H
Sbjct: 139 YFTDIFDFLTLS---ATIDDTIFCVH 161
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 376 EFTSRGVSDTRAAPQGSSGEGACSECLQLERKIRRQRSKQTHFIERLKSQLI-ELERFAA 552
E + D+ + + S + AC Q + +Q ++Q HF E++++ + E R A
Sbjct: 92 ELPKINLPDSSLSSKLQSCKSACENSSQSLLNVEQQYAQQVHFWEKIRTDIYREGLRSDA 151
Query: 553 NPATLND 573
+LND
Sbjct: 152 AVKSLND 158
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 316 LRQILKAPPEEKDAMLK-ALEEFTSRGVSDTRAAPQGSSGEGACSECLQLERKIRRQRSK 492
L ++ EE D +L L R A S G C L L ++RR R +
Sbjct: 4 LSRVFDNEKEELDPLLNNPLTASEFRAKKAELEAELESIRNGTCKTLLDLADELRRSRDE 63
Query: 493 QTHFIERLKSQLI 531
+ ER ++ L+
Sbjct: 64 ELEIAERWRTFLV 76
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 631 LQDFDLFRFLNVQ*NFCAYRRSKSRDLQRTFPVLSVV 521
L+D DL + N Q FC R ++R + PV+S V
Sbjct: 122 LKDPDLTHYRNFQDFFCRELRPETRPVDPVSPVVSPV 158
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 447 ATSSFTGASLRSCSCIRHSTRSELFESL 364
+TSS + LR ++HST +LFE +
Sbjct: 91 STSSASSPPLRRLPSVQHSTFDDLFEGV 118
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 163 CEPLGAPKEICDENESEQNSGDRLHALEEEQEILSSSVFSLTSHLAQVEF 312
CE LG+P +E QN+GD+ + + E+L++ + +A ++F
Sbjct: 254 CEILGSP------DEQSQNTGDKGGGIWDRAELLANKLGISLPKMAPLDF 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,165
Number of Sequences: 5004
Number of extensions: 50144
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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