Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e10
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 158 6e-40
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 0.78
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.8
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 27 3.2
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 4.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 26 5.5
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 5.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 7.3
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 25 9.7
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 158 bits (384), Expect = 6e-40
Identities = 63/119 (52%), Positives = 89/119 (74%)
Frame = +2
Query: 173 NRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEI 352
N+Q WED +FP +C+ CLGDN Y+RMTKE G+ECKICS+P T+FRW + KT+I
Sbjct: 10 NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69
Query: 353 CQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSD 529
C C++ KN CQ+C+LDL++GLPI +RDAALK+ + P N++N+E++ QN + LSN +
Sbjct: 70 CVGCARYKNCCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGE 128
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 0.78
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 431 RDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLA 592
R+A K Q+DL +N NL+S+ ++ + L K +SD +R A
Sbjct: 153 RNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIRNA 206
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 164 NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPF 298
NT+ W A F I C C + + + + CK C+ PF
Sbjct: 54 NTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCNHPF 98
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 75 ERSVLFDRLSCVESKIISRKD---TPWLHRS 158
+R+VLFDRLS V+ +++ PWL ++
Sbjct: 33 KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 316 SRSKNAFQENRNMSDLFETEKCLSNMFIGFGIWSANPSE 432
S KN F +N +++ + LSN+ + I+S PSE
Sbjct: 92 SPKKNDFDDNMSLNSIVTMGSILSNVSSVWSIFSTAPSE 130
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 404 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLV 583
+ Y + + D++ +++ + RN N YI+NL +L DP+ +LK K ++ L
Sbjct: 648 ISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPS--LLALKQKTATMLAA 705
Query: 584 RL 589
L
Sbjct: 706 ML 707
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +2
Query: 380 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL 553
VC LEYGL D A K + E + + IQ+LE + D T+P +
Sbjct: 452 VCMYIDDGLEYGLFRHAGDGAFKPATNYENFEYEERFLIQDLE--VIGVDTTKPVEPI 507
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 395 LLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQ 538
++ + L I++R++ ++QD + N K Y ++ LE++ N T+
Sbjct: 32 IIKINTQLSIKIRESENEIQDLIQENFTLKSYLVK-LEARFRNQSQTE 78
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +2
Query: 419 PIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLART 598
PI + +QD+ N NK++ +N S + D + N K S + ++ + T
Sbjct: 25 PIDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMDDSGELCNFELEKDSLESMIHESST 84
Query: 599 A 601
A
Sbjct: 85 A 85
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 289 KTFHSVSMVSRSKNAFQENRNMSDLFET 372
K+ H +M+ +A +EN N++DLFET
Sbjct: 145 KSKHGSNMIHFEASA-KENTNVTDLFET 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,146
Number of Sequences: 5004
Number of extensions: 63596
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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