Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e10
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 221 4e-58
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 219 1e-57
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840... 30 1.9
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 29 2.5
11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843... 28 5.7
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 28 7.6
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 28 7.6
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 28 7.6
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 221 bits (540), Expect = 4e-58
Identities = 96/160 (60%), Positives = 124/160 (77%), Gaps = 2/160 (1%)
Frame = +2
Query: 185 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 364
WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC
Sbjct: 14 WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73
Query: 365 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQ 538
KLKNVCQ CLLDLEYGLP+QVRD AL D +PR++VN+EY+ + + +
Sbjct: 74 CKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAEEHDRRARAGIDYD 133
Query: 539 PTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGEC 658
+N K++ ++D +++L RTAPYYKRNR HVCSF+V+GEC
Sbjct: 134 SSNG-KAR-ANDTILKLQRTAPYYKRNRAHVCSFYVRGEC 171
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 219 bits (536), Expect = 1e-57
Identities = 95/160 (59%), Positives = 125/160 (78%), Gaps = 2/160 (1%)
Frame = +2
Query: 185 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 364
WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC
Sbjct: 14 WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73
Query: 365 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQ 538
KLKNVCQ CLLDLEYGLP+QVRD AL + D +PR++VN+EY+ + + + +
Sbjct: 74 CKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAEE-HDRKARAGIDY 132
Query: 539 PTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGEC 658
++ K++ +D +++L RTAPYYKRNR HVCSF+V+GEC
Sbjct: 133 DSSHGKAR-PNDTILKLQRTAPYYKRNRAHVCSFYVRGEC 171
>05_07_0285 +
28982502-28982782,28982888-28982989,28983189-28984006,
28984594-28985050,28985203-28985242
Length = 565
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 125 IKKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGD 232
I KG +AT+ +TN Y RQ +++ I Q C D
Sbjct: 148 ITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPD 183
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 482 CLLRFEVGHPELLMQHLSLGLADHIPNPINMF 387
C LRF GHPEL + L G+ DH+ MF
Sbjct: 315 CCLRFFQGHPEL--RKLKNGMPDHLDELDRMF 344
>11_05_0103 -
19083663-19083856,19083962-19084169,19084239-19084323,
19084591-19084865
Length = 253
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -2
Query: 217 LAQYWKIGVFPILTIVCVC*LRCSHGVSFLDIILDSTQLNLSNKTLLSHFYM 62
+ + W G+ +L + V LR SHGV+ I++ N SNK+ SH M
Sbjct: 202 ITKVWNGGLRRLLGLRPVTSLRGSHGVNVTGEIVEPEADNKSNKSSGSHGLM 253
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 SQLSNSDPTQPTNSLKSKGSS-DLLVRLARTAPYYKRNRPHVCSF 640
S +S+ + P +SL+S S L RL+ + P Y R RP S+
Sbjct: 228 SSVSSYNKANPESSLRSSVSMHSLSSRLSTSEPLYSRERPSFPSY 272
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 413 GLPIQVRDAALKVQDDL--PRNEVNKEYYIQNLESQLSNS 526
GLP +R+A K++ P+N EYY+ + +LS S
Sbjct: 160 GLPKDLREARKKIKFPTVSPKNSATPEYYVTEVLPKLSKS 199
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 443 LKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNR 622
L+V DD P ++ E+ +Q L L + ++ L L V + +KR R
Sbjct: 335 LEVLDDFPSVQMPFEWLVQ-LTPPLKKRAFSISSSPLAKPNQIHLTVSIVSWRTPFKRMR 393
Query: 623 PHVCSFWVKG 652
+CS W+ G
Sbjct: 394 RGLCSSWLAG 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,194
Number of Sequences: 37544
Number of extensions: 369088
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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