Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19e09
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665...    45   5e-05
12_02_0867 - 23828084-23828845,23828931-23829067,23829148-238293...    29   3.4  
03_01_0350 - 2753217-2754152                                           28   6.0  

>09_03_0035 -
           11765108-11765376,11765909-11766005,11766505-11766579,
           11767367-11767650,11768466-11768562
          Length = 273

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 188 CTDLKKKYDDCFNTWFSERFLKGDQDDSVCAGIFKIYQECVK 313
           C++L+  Y +CFN W++E+F KG      C G +  Y+ C++
Sbjct: 86  CSELRAAYHECFNRWYAEKFAKGQWHKDDCVGEWHKYRACLE 127


>12_02_0867 -
           23828084-23828845,23828931-23829067,23829148-23829354,
           23830226-23831027
          Length = 635

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +2

Query: 263 DDSVCAGIFKIYQECVKNAMKQQSIDFKEIDKDILG 370
           ++ + A + ++      N +K+Q+ DF E+++D++G
Sbjct: 354 EEELEAELARLELNITSNCLKEQTFDFSEVEQDLIG 389


>03_01_0350 - 2753217-2754152
          Length = 311

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 164 KMNSIGEECTDLKKKYDDCFNTWFSERFLKGDQDDSVCAGIFKIYQE 304
           K  S+G+E  D +KKYD+ F      R L    DDS    ++   QE
Sbjct: 259 KPESVGDEAIDTRKKYDEEFAVQPMRRSL--SMDDSCHKQLYVSVQE 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,673,379
Number of Sequences: 37544
Number of extensions: 291616
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)