Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19e08
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 36 0.004
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 35 0.009
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 32 0.060
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.060
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 31 0.14
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 30 0.24
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.24
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.43
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 29 0.43
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.56
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 29 0.56
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 28 0.98
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 28 1.3
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 1.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.7
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 1.7
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 1.7
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.7
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 2.3
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.0
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 5.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 5.2
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 26 5.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 5.2
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 6.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.1
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/119 (21%), Positives = 53/119 (44%)
Frame = +1
Query: 241 TLVHLVRATEDKLERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVET 420
TL +R E R+K L + + + A+ + LE K + L +E
Sbjct: 452 TLEEYIRYVESAKNAFTTRQK-LWQTWQSSVQAVSRAKTQLEKCKKQAKSQQKSLPYLEE 510
Query: 421 ILLQKEEREKDSQKKTDEALESIQKSILALTTTVTENAKENKNTEVDSKLESYGNTLER 597
+ + D +K+ E+ +++ + +LTT+ ++ K + T ++S +ES +ER
Sbjct: 511 QYEKYRAKAADLEKEFSESTTLLKRDLSSLTTSRVDDLKASVETWLESAIESQKEIIER 569
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 35.1 bits (77), Expect = 0.009
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +1
Query: 301 KMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETIL------LQKE--EREKDS 456
K G+ +KKM K+ ++LE LKG + + ET+L +KE ER++
Sbjct: 20 KTNGDFIKKMNTTDSKRLKLLEDLKGKLEVECKIRDGAETLLQVFDTNFKKETKERKEML 79
Query: 457 QKKTDEALESIQKSILALTTTVTENAKENKNTEVDS 564
+KK + LES +K I L +++ EN + S
Sbjct: 80 KKKCTDELESSKKKIEELVSSIESFQGENGEAKTGS 115
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.060
Identities = 22/97 (22%), Positives = 50/97 (51%)
Frame = +1
Query: 277 LERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDS 456
LE + R + + E+ ++ + DK HR+L +G + +++L ++ + +KE+ +K S
Sbjct: 126 LEAKKRRIESMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQL--LKKSIRRKEKEKKKS 183
Query: 457 QKKTDEALESIQKSILALTTTVTENAKENKNTEVDSK 567
E ++ +K++L EN K+ + ++ K
Sbjct: 184 SDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKK 220
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.060
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Frame = +1
Query: 277 LERHEFREKMLGEQVKKMLMALDKKHRMLEPLK----GMISRLDQRLSNVETILLQKEER 444
+E E R +M +V+++ ++ E LK I +L+ +SN +++LQK++
Sbjct: 93 MENLEHRYEMTVSEVRRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDE 152
Query: 445 EKDSQKKTDEALESIQ--KSILALTTTVTENAKENKNTE 555
+ S ++ E E I +S ++ V + K++K E
Sbjct: 153 LEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVE 191
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 31.1 bits (67), Expect = 0.14
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +1
Query: 202 REVTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQ-VKKMLMALDKKHRMLEPLKG 378
+ V I+D+ D L +++ + R EDK F K+L ++ V + D + ML LK
Sbjct: 430 KNVDIDDVEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKE 489
Query: 379 MIS-RLDQRLSNV-ETILLQKEEREKDSQKKTDEALESIQKSILALTTTVTENAKENKNT 552
+ +L + + I L +E E Q A +I S L L T+ + N N
Sbjct: 490 VCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRA-GNIDFSALVLGTSFWPLSPNNVNF 548
Query: 553 EVDSKL 570
+ +L
Sbjct: 549 HLPEEL 554
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 403 LSNVETILLQKEEREKDSQKKTDEALESIQKSILA-LTTTVTENAKENKN 549
LSN T LL E D++ + EAL +IQ +I+A L T++ +E+ N
Sbjct: 1008 LSNPSTSLLTDENTVDDNKVSSVEALSNIQSAIVADLLTSLFLGTRESLN 1057
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.24
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Frame = +1
Query: 190 QTECR--EVTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQVKKMLMALDKKHRML 363
Q EC+ T+E ++DVL ++ ED++ R + + ++ + + L K H L
Sbjct: 1659 QKECKIKSNTVESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDRCEHLSGKLKKLHSQL 1718
Query: 364 EPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESI--QKSILALTTTVTENAK 537
E R +Q+ L + ++++ KK + E + + SIL + + + K
Sbjct: 1719 EEQHETFFRAEQQRMTQLGFLKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIEK 1778
Query: 538 E 540
E
Sbjct: 1779 E 1779
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.43
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 424 LLQKEEREKDSQKKTDEALESIQKSILALTTTVTENAKENKNTEVDSKLESYGNTLER 597
+L+ +ERE Q+ EAL Q S LALT++ N + + NTE DS+ ++ + R
Sbjct: 74 ILEIKERE---QRMLAEALGLPQPSALALTSSKAAN-RSSTNTEKDSRSIAHSTSRSR 127
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.43
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 322 KKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESIQKSI 501
K++ A+ LK I +L + L++ ET++ + + D Q + LES +++
Sbjct: 356 KRLQSAIQPLQEENNSLKQQIEQLQRELAS-ETVVKENLKSSLDQQSANVQKLESTNRAL 414
Query: 502 LALTTTVTEN--AKENKNTEVDSKLES 576
+ T+ E+ +NK E++ L+S
Sbjct: 415 ESTIKTLEEDVYTMKNKIIELEGILKS 441
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 29.1 bits (62), Expect = 0.56
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 316 QVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEERE-----KDSQKKTDEAL 480
+V + + L +++ ++ L + + L QRLSNV + EE + +D+ D+A
Sbjct: 5 KVTRKDLLLSPENKEIDSLDDVSALLSQRLSNVFEFSIASEEVQSDEVFEDTYPNDDQAT 64
Query: 481 ESIQKSILALTTTVTENAKEN 543
++ + + T VTE + +N
Sbjct: 65 FNLFSDVNTVVTKVTEPSIKN 85
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.56
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 343 DKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALE 483
+KK L+ +I ++ + +N+E+ LL +E+ + S+KK E E
Sbjct: 102 EKKINELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.3 bits (60), Expect = 0.98
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 361 LEPLKGMISRLDQRL-SNVETILLQKEEREKDSQKKTDEALESIQK 495
+EP +S LD+ + VE ++L++ ++ D QK+ D L++ K
Sbjct: 108 IEPENSKLSDLDEETRATVEKMMLEQSQKRTDEQKRKD-VLQNFMK 152
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +1
Query: 283 RHEFREKMLGEQVKKML-MALDKKHRMLEPLKGMIS-----RLDQRLSNVETIL-LQKEE 441
R F EK ++KML + + HR + + D + SN E ++ + KEE
Sbjct: 5 RKRFNEKGRQSGIQKMLNLKRARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEE 64
Query: 442 REKDSQKKTDEALESIQKSILALTTTVTENAKENK 546
R+K Q+ D+ L+ + SI + + ENK
Sbjct: 65 RQKRKQELKDQLLKENEGSISSKKKKRLDKYIENK 99
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.3
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Frame = +1
Query: 265 TEDKLERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKE-- 438
TE + RE L ++++ L + R +E K MI + ++ S +T+ + E
Sbjct: 227 TEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENAK-MIEGIRKKRSERDTLNVSTEFP 285
Query: 439 EREKDSQKKTDEALESI----QKSILALTTTVTENAKENK 546
E KD + T + ++ QKSI++ T+NAK+ K
Sbjct: 286 EETKDLSEDTKPSKQARRFFGQKSIVSNRNMPTDNAKQQK 325
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 1.3
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Frame = +1
Query: 289 EFREKMLGEQVK-KMLMALDKKHRMLEPLKGMISRLDQRL----SNVETILLQK-EEREK 450
+ R K+ E+V + L KKH+ML L+ + +QRL S +E ++ + +RE+
Sbjct: 283 DIRSKLESERVVLEQSDLLHKKHQMLIQLENDLQFREQRLSARESELENVIASRLAQREE 342
Query: 451 DSQKKTDEALESIQKSILA-LTTTVTENAKENKNTEVDSKLESYGNTLERRLNAT 612
+++ ++ L + + T V K + VD + +T E ++ T
Sbjct: 343 ILRRELEKQLRDMDARYQRHMQTVVNSMQKMRVTSPVDHNEQPESSTAEMFVDCT 397
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/98 (22%), Positives = 49/98 (50%)
Frame = +1
Query: 337 ALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESIQKSILALTT 516
+++ + ++L+ LK + +L+ + +++ + ++D Q E +E I+K IL
Sbjct: 714 SIEAEKKILDDLKKQYNFASNQLNEAK---IEQAKFKRDEQLLV-EKIEGIKKRILLKRR 769
Query: 517 TVTENAKENKNTEVDSKLESYGNTLERRLNATDARLEA 630
V + + K++ TLERR++ T+ LE+
Sbjct: 770 EVNSLESQELSVLDTEKIQ----TLERRISETEKELES 803
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 340 LDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEAL 480
+DK+H + E L + LD++L ++ +L E+ ++ ++ + L
Sbjct: 13 IDKEHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHGL 59
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 265 LLVPNELRSSAHPGYPRL*LPGILFEESTIEARRRPTIV*FRSACRPFNSKL 110
+L P E+ S P+ P IL + S A P I S +PFNSKL
Sbjct: 522 VLQPLEVNRSISIPPPKSISPSILHKPSLESASSTPKISSCSSTPKPFNSKL 573
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 403 LSNVETILLQKEEREKDSQKKTDEALESIQKSILALTTTVTE 528
++ +E ILL+ E+ + E ES QK +L LT +TE
Sbjct: 19 ITQIEKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITE 60
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/82 (18%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 VRATEDKLERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRL-SNVETILLQ 432
+ A + +++ K++ ++ K + +KK+ M+E + I+ + + L S + +I ++
Sbjct: 358 LEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQKIAGMREELESQISSITME 417
Query: 433 KEEREKDSQKKTDEALESIQKS 498
E+ + + E L +++ S
Sbjct: 418 FEKLKSHVELYIAELLRNLRSS 439
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 184 TPQTECREVTIEDIRDVLMTLVHLVRATEDKLERH 288
TP T C+++ + + VL +VHL + LE+H
Sbjct: 247 TPMTYCKDLGLLGPKTVLAHMVHLDTQDLEILEKH 281
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +1
Query: 382 ISRLDQRLSNVETILLQKEEREKDSQKKTDEALESIQKSILALTTTVTENAKENKNTEVD 561
+S D V LL ++ + QKK E +E+ + A + +EN ++N+ +
Sbjct: 88 LSNFDSAYERVRR-LLNQQGGKSSLQKKEVEQIETQEGGDNAKGSPSSENKDSDRNSRLQ 146
Query: 562 SKLESYGNTLER 597
+E N L++
Sbjct: 147 QLIEKKRNALKK 158
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 VRATEDKLE--RHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILL 429
VR ++D E RH F E + + + ++ M L K H L PLK + L ++++ V+ LL
Sbjct: 179 VRKSQDDEENFRHSFDEAL--KTIPELKMHLSKAHDDLNPLK--VLNLFKQITPVDCELL 234
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 406 SNVETILLQKEEREKDSQKKTDE---ALESIQKSILALTTTVTENAKENKNTEVDSKLES 576
+N+ I+L+ ++ +QK E A +Q ++ + EN+ +KN EV + +E+
Sbjct: 1243 NNLNEIILEYKKASTVNQKMEKEEELAFLRLQALKASVKSNNAENSGSSKNEEVSATMEN 1302
Query: 577 YGNTLERRL 603
+ L++ L
Sbjct: 1303 LISQLQKGL 1311
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 397 QRLSNVETILLQKEEREKDSQKKTDEALESI 489
+RL+ E +L +K+ERE+ Q++ + E +
Sbjct: 884 RRLAEEEALLKEKQERERQLQEERQKMQEEV 914
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 280 ERHEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQ 459
E + E++L + +K +A ++L + I L+ +L ++ LLQ EERE S+
Sbjct: 72 ESSQHAEEILSREKEKFRIA-----KLLNITENEIMSLESQLQKMKEQLLQLEERENTSE 126
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = +1
Query: 427 LQKEEREKDSQKKTDEALESIQKSILALTTTVTE------NAKENKNTEVDSKLESYGNT 588
+Q++++E+ + K + I L L T + + K+ DSK + GN+
Sbjct: 380 MQQDQKEQHKKSKNKDPFRKITHPSLHLGKFSTPKLIKRMSLRSKKSLRNDSKSDDVGNS 439
Query: 589 LERRLNATDARLEAVK 636
R A+ A AVK
Sbjct: 440 THRFSTASAASTSAVK 455
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +3
Query: 147 QTMVGRRRASIVDSSNRMPGSYNRGYPGCADDLSSFGTSNRRQTGET*VQREDAWGTSEE 326
QT + I D ++ +PG+++ P C S +N +++ + + SE
Sbjct: 274 QTAAAPNESQIPDDTDFVPGTFDEDQPACLAFACSLTHANSKRSIMLPQDIDPTFPDSEP 333
Query: 327 DADG 338
+ DG
Sbjct: 334 EDDG 337
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 6.9
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +1
Query: 286 HEFREKMLGEQVKKMLMALDKKHRMLEPLKGMISR--LDQRLSNVETILLQKEEREKDSQ 459
H +++ + E+ K A K +++ + + +Q+L+ E I +EE + ++
Sbjct: 745 HAYKQNIDDERDKAYQEAYAKAKNVIDAERERQRKEIFEQKLA--EAIREAEEEAARAAE 802
Query: 460 KKTDEAL---ESIQKSILALTTTVTENAKENKNTEVDSKLE 573
++ + L E QK + T AKE + E+ KLE
Sbjct: 803 EEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLE 843
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.1
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +1
Query: 316 QVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKDSQKKTDEALESIQK 495
+V++ML AL ++ L S+ R ++ E+ ++Q + +E ++ +KT + + QK
Sbjct: 9 KVQEMLDALKAEYNALAH-HSFASKA--RGNDYESSMIQSQIQEIEAFRKTVDDMYEKQK 65
Query: 496 SIL-ALTTTVTENAKENKNTEVDSKLESYGNTLER 597
SI + + +E + V++ SY N ER
Sbjct: 66 SIRETYEKDINKLKRELEELGVEANTASYRNRGER 100
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 208 VTIEDIRDVLMTLVHLVRATEDKLERHEFREKMLGEQVKKMLMALDKKHRMLE 366
++ ++I+ L+ + HL++ HE EK+ +L+ L ++HR+ E
Sbjct: 285 LSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESFGASSLLIELSQEHRLDE 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,497
Number of Sequences: 5004
Number of extensions: 41056
Number of successful extensions: 176
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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