Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19e02
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    29   0.74 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   9.1  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 586 DRRNIPDIDNSNLYQHHYQESHRWCTEIYQLEN*EDIRTEL*DHLK 449
           DR   PD +   L  H Y E      ++ ++E+   ++T++ D LK
Sbjct: 307 DRSRYPDFNARKLVYHAYVEQSAVINDLLEIEDASLLKTDISDELK 352


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 445 LPSNDLITRFECLPNFPTGIF 507
           LP ND   R+E + + PTG +
Sbjct: 692 LPFNDFRVRYEIMAHLPTGTY 712


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 370 PSCACPSDFNPSTPSMYDCRKYGHCLPSN 456
           PS A PS  + S+P++ + +    CLPS+
Sbjct: 79  PSIAPPSLSHASSPNLSNSQDEAECLPSD 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,540
Number of Sequences: 5004
Number of extensions: 49106
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)