Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d24
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    28   0.64 
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   2.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   4.5  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   4.5  
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    25   4.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   4.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 277 AQEDSYFYDKQKEQLEKIRKKLKLN-PEISQKEDK*AEKLR 396
           A+ED + +  + EQL K+++ LKL+  E+ + E +  +K++
Sbjct: 47  AKEDFFVHQHEIEQLRKLKESLKLHREELDELESRVDKKMK 87


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  EKNPKNMNSIKISAICSRCTNYLLPKQIA 126
           + N KN+ +I+ S +C+    Y  P ++A
Sbjct: 414 KSNQKNVGTIRCSNLCTEIVEYSSPDEVA 442


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 200 DLEQERAEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSERN 340
           D ++E      ++S  P  +  +   P      TT RRS W K+  N
Sbjct: 198 DKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAPEN 244


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 55  NMNSIKISAICSRCTNYLLPKQIAGISDLNNHLNV 159
           NMN   ++ +C   T       + GIS + NHL +
Sbjct: 621 NMNDYSVTGVCIEETEKRPVFTMFGISGMGNHLQI 655


>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 233 DLSGNP---AEASANTEQPKKIVTFTTNRRSNWKKSERN 340
           D S +P   A A ANT  P      ++  + NW + E N
Sbjct: 20  DQSNSPTAGAHAKANTASPAAEPAPSSKEKENWNRQEEN 58


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 301 DKQKEQLEKIRKKLKLNPEISQK 369
           DK K  +EK+  KL  +PE+ QK
Sbjct: 290 DKMKGNMEKMAGKLTRDPELVQK 312


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 113 QNRLPELVTLTIILM*TCVEGLQLRLVYQDLEQERAEAAVDLSGNPAEASANTE-QPKKI 289
           QN+  EL  L  +L     +  +LRL+ + LE ER +       + +  S++ E Q K +
Sbjct: 512 QNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSL 571

Query: 290 VTFTTNRRS 316
            +  TN ++
Sbjct: 572 ESSLTNSQA 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,925
Number of Sequences: 5004
Number of extensions: 26228
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)