Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d24
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411...    28   3.4  
02_02_0373 - 9534016-9534226,9534251-9534297,9534453-9534500,953...    27   6.0  
07_03_1181 + 24606407-24606480,24607060-24608752                       27   7.9  

>02_01_0558 +
           4109929-4110042,4110989-4111097,4111404-4111563,
           4111721-4111796,4111984-4112109,4112233-4112484
          Length = 278

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 337
           +E+ +D+ G P E S N    K++    +NR S  +  +R
Sbjct: 103 SESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKR 142


>02_02_0373 -
           9534016-9534226,9534251-9534297,9534453-9534500,
           9534772-9534972,9535090-9535215,9535386-9535461,
           9535617-9535776,9536074-9536182,9537225-9537398
          Length = 383

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 337
           +E+ +D+ G P E S N    K++    +NR S  +  +R
Sbjct: 123 SESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKR 162


>07_03_1181 + 24606407-24606480,24607060-24608752
          Length = 588

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 274 AAQEDSYFYDKQKEQLEKIRKKLKLNPEISQKEDK*AEKLR 396
           A  ED      +K + EK RKK K    + +KE+K  E+++
Sbjct: 64  AGAEDGNETKSEKRKKEKKRKKAKALEALEEKENKEREEMK 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,880
Number of Sequences: 37544
Number of extensions: 142932
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)