Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d24
         (479 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    32   1.2  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    29   6.4  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 436 SICIEICLFLCVFVSISQLICL 371
           S+C+ +C+FLCV V +S  +CL
Sbjct: 86  SVCMYLCVFLCVCVYVSVSVCL 107


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 436 SICIEICLFLCVFVSISQLICLLS 365
           S+C+ +CL +CV V +   +C+LS
Sbjct: 24  SVCVCVCLCVCVCVCVCLCLCVLS 47


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 433 ICIEICLFLCVFVSISQLICL 371
           +C+ +C+ LCV+V I   +CL
Sbjct: 225 VCVPVCVCLCVWVHICVCVCL 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,935,181
Number of Sequences: 237096
Number of extensions: 906749
Number of successful extensions: 6815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6786
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)