Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d19
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy...    98   9e-22
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   1.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   2.6  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   2.6  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   5.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   7.8  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   7.8  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   7.8  

>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 133

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 49/129 (37%), Positives = 76/129 (58%)
 Frame = +2

Query: 305 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERSAV 484
           E ++ L  E  K  + +YCPYSNF+VGA +++++ +    G N+EN++    +CAER A+
Sbjct: 4   EDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAERVAI 63

Query: 485 AKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVLCTK 664
            KAV  GYTKF  + +++ +   T PCG+CRQ + EF     DI +Y+        + T 
Sbjct: 64  TKAVSMGYTKFMAIGVMSAKGRVT-PCGICRQVIREFSK---DINVYMFHDDGGYDMKT- 118

Query: 665 LSHLLPLSF 691
           +  LLP SF
Sbjct: 119 IEELLPDSF 127


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 15  IYQDNAETDSVNLYLDIF 68
           +Y+DN  TD++N YLD+F
Sbjct: 805 LYEDNELTDALNNYLDLF 822


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +2

Query: 410 SRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAH 541
           +++Y+G  +  S + P +  +RS +   +CD    F+ ++ + H
Sbjct: 563 TKLYSGTGVIVSVVPPLIVVDRSVIPVDICDIRLTFQSMSAMGH 606


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 293 NSLDETVQNL-LMEAVKIRKRAYCPYSNFSVGAAILTEEDS 412
           N+ DE  + L L++    R  A CP  N  + A++LT  D+
Sbjct: 433 NTADEFTEQLNLLKNEVARLSAICPSPNSGINASVLTNADN 473


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 202 QLVADRTGNRAHQHDRD 252
           QL+AD+ GN  H H+RD
Sbjct: 246 QLMADKAGNVIHLHERD 262


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 460 RWCQSGVLNVASGVHSRIFFGKYSGTNRKIGIRTI 356
           +W       V  G ++ +F G+   TNR++ I+ I
Sbjct: 8   KWTYVKERKVGEGTYAVVFLGRQKETNRRVAIKKI 42


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 595 ELVEGLPTYPAGRSEFSLMGYYSHTF 518
           +LVEG    P G S F  +GY S  F
Sbjct: 408 QLVEGSTVPPIGTSSFDYIGYSSEKF 433


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 34  KQI-QSIFISIYSCL-TKYVNLQILLHANRRLHVVISHNAKGTFNHETISNQRSFNCNQL 207
           KQ+ Q  F ++ S   T++VN  ++       +V +SHN     N      QR  N N +
Sbjct: 442 KQVFQRAFFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVCNIIKAQFQRLKNANSI 501

Query: 208 VADRTGN 228
            A +  N
Sbjct: 502 PAKQVEN 508


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 518 KCVAIVAHQREFTAPCGVCRQTLNEFCSSDGDIEIYLSRPTMDTVL 655
           +C A +   ++F+A  G+ ++ LNEF     +I  YLS   ++ VL
Sbjct: 224 ECFASIV--QKFSAIGGLIKKALNEFSLYKTNISFYLSNFIVNGVL 267


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 532 YSHTFKFRVTVTDSLRNSRPLCAHRWCQSGVLNVASGVHSRI 407
           +SH++K+ + +  S+       A     SG++++AS +HS I
Sbjct: 100 WSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSI 141


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 293 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTL 451
           NS+++    L+ E  K+R      Y      + +L  + SR Y     ENS L
Sbjct: 273 NSIEDWDYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVL 325


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 266 MDNFQIVD-FNSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILT 400
           M+  +I+D  + +DE  +++L++++K  K  Y P+S       +LT
Sbjct: 7   METNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRRLLT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,084
Number of Sequences: 5004
Number of extensions: 59670
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)