Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d18
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.6  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   10.0 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   10.0 

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 558 NYGIC*YLGNIPQYLCSLLPNLLKSHHEFLKQ 463
           N+  C +  N+  Y CS LP+L K    + +Q
Sbjct: 229 NFVYCDHCSNVYHYDCSPLPSLNKETRNYSQQ 260


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 126 NFERIKSSNLKNSQRKNVCMQTDNIETKSICV 221
           NFE+    + +NSQ K  C    NI+T  I +
Sbjct: 113 NFEKNLVQHRRNSQNKLKCAMEVNIKTNYIVI 144


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 44  FTCYEIQFMFKYNNSYYNWTPFMYCDLQF 130
           FTC     +F  N+SYY +   +YC   +
Sbjct: 204 FTCSLCYTVFGPNDSYYEYEGKVYCHYHY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,784
Number of Sequences: 5004
Number of extensions: 50026
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)