Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d16
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   4.2  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   5.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.7  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    25   9.7  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 103 RFVFRSHSQGIFRIYTYFISNLSGNSNASF 14
           R +FR  +QG+ R    F S  SG+SN +F
Sbjct: 4   RSLFRGVAQGLKRSSVRFQSTSSGSSNGNF 33


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 REKDDRLNYFLGGLACGPILGPYIGSY 416
           RE+   + +F  G   GP LGP +G +
Sbjct: 222 RERGLAIAFFAAGPYAGPTLGPLVGGW 248


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/87 (25%), Positives = 32/87 (36%)
 Frame = +3

Query: 384 GPILGPYIGSYHAXXXXXXXXXXXXXXXXXXXXXXHVFIPDVPNHMNTIRSWRHDFTLRK 563
           GPI+GP IG +                         VFI     H +TI  ++  + LRK
Sbjct: 243 GPIIGPIIGDFITQSYLEWRWTFWINMIWAAAVIVFVFIFFPETHEDTILDYKAKY-LRK 301

Query: 564 DPLDDLKHTCGK*ARHVKNEMFRKRIQ 644
              +   +T  +  R  KN M +   Q
Sbjct: 302 TTGNTAYYTIHERERDPKNAMIQAATQ 328


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 377  SLRSNFRAIHRFVPRRSSGRNISRSCRY 460
            S+RSN   IH FV +  S RN  R  R+
Sbjct: 3350 SIRSNGGTIHPFVIQYPSARNSRREERF 3377


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 374 TTQEIIQSVILFSEYLRSIGDQSESSTHQAERYRMQHVSFHNCLE 240
           +T E++  +   S+Y++++ D S  +     RY M+  S   C+E
Sbjct: 219 STLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVE 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,533
Number of Sequences: 5004
Number of extensions: 52854
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)