Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d12
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   1.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   1.1  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   2.6  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   5.9  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   5.9  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.8  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 105  RMKVFEGDERALLAARIKINEEF 173
            R KVFEGD RA++  R K + E+
Sbjct: 1408 RTKVFEGDGRAIIFCRTKKDVEY 1430


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 105  RMKVFEGDERALLAARIKINEEF 173
            R KVFEGD RA++  R K + E+
Sbjct: 1408 RTKVFEGDGRAIIFCRTKKDVEY 1430


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 469 ITFAVLFKIVLF*LALYIYYL 407
           IT+ VL+  + F LAL+IYYL
Sbjct: 253 ITYLVLWLFLSFLLALWIYYL 273


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 204 SIKAMIAFGEDIERELRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAIL 362
           S++ +++      +E R Q I  +  K G+Y  +   D  KLD   F   A++
Sbjct: 216 SLRKLLSSSSKNPKEPRLQTIYLKTNKRGLYTLKHVVDKSKLDVRIFRSEAVV 268


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +3

Query: 126 DERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEAR 305
           D+R  LA+ +       ++KN+ ++++  + IA     +  L+ ++IQA  I P +   R
Sbjct: 513 DKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLLETLR 572

Query: 306 --ITDDT----VKLDN-IPFNDHAILE 365
              T D     +KL N + F+DH  L+
Sbjct: 573 EIKTPDVQLLLLKLINTVAFDDHTTLQ 599


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 192 QNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEARITDDTVKLD 332
           + E+ IK ++ F ++   E  T+  +  EIK   YEA I   T+K++
Sbjct: 642 KEEDRIKKLMMFLDNQFGESMTKTEKGVEIKFEKYEASIDFSTMKVE 688


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -3

Query: 314 ISNSCFINTWFYFSGLNHLSP*FPFYILSKCNHRFNRVFILNIFVFAKFFIYFYSC 147
           +SNS F +++ +   L+ ++    F  LS CN+  +   IL+    A  F+Y   C
Sbjct: 26  LSNSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALS---ILHNICLAS-FLYLSKC 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,945
Number of Sequences: 5004
Number of extensions: 33195
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)