Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d12
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    30   1.1  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    28   3.4  
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131...    28   3.4  
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    27   6.0  
06_02_0236 + 13331024-13331264,13333164-13333744                       27   7.9  

>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
            21742227-21742292,21743213-21743371,21743573-21743609,
            21743757-21744194,21744735-21744817,21744920-21744956,
            21745146-21745214,21745316-21745407,21745481-21745565,
            21745903-21745982,21746327-21746724,21746813-21747717,
            21747825-21747915,21748617-21750680,21750681-21750749,
            21750850-21751273,21751644-21751763
          Length = 1832

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/77 (22%), Positives = 34/77 (44%)
 Frame = +3

Query: 180  NKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAI 359
            NK+ Q+++  KA++A   +       ++     ++   Y   + D    +          
Sbjct: 1613 NKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQSCGYCADE 1672

Query: 360  LEDGTEAPRPCCQDKTK 410
            L+D  EAP+PCC  +T+
Sbjct: 1673 LKDTREAPKPCCNPQTE 1689


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +3

Query: 180  NKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEARITDDTVKLDNIPFNDHAI 359
            NK+ Q+++  KA++A   +       ++     ++   Y       T +  +    D   
Sbjct: 1619 NKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVFCSQLRTSRFTSPHATDE-- 1676

Query: 360  LEDGTEAPRPCCQDKTK 410
            L+D  EAP+PCC  +T+
Sbjct: 1677 LKDTREAPKPCCNPQTE 1693


>02_03_0387 -
           18412064-18412144,18412280-18412361,18412922-18413142,
           18413387-18413745,18413834-18414443,18414546-18414605,
           18414685-18414751,18414843-18414936,18415012-18415125,
           18415242-18415308,18415386-18415551,18416587-18417080
          Length = 804

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 132 RALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREI 281
           +A +A   + ++  R  KN+  +++    + FGED E +L+  + QAR++
Sbjct: 452 QAAIAKAEEASKALRPEKNISGKHAESEELVFGEDYE-DLQKSLEQARKL 500


>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +3

Query: 75  LQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELR 254
           ++SF +    +++V + +E ALL  +   N++    +  + EN+ K    F  D +++ +
Sbjct: 569 MESFAREEEDKLRV-QAEEAALLGKKQTKNKQVSLGEKQKAENTAKPWKKFKNDYKQDQK 627

Query: 255 TQV 263
            QV
Sbjct: 628 KQV 630


>06_02_0236 + 13331024-13331264,13333164-13333744
          Length = 273

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 75  LQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELR 254
           ++SF K     ++V E  E ALL  +   N++  + +  + EN+ K    F  D ++E +
Sbjct: 118 IESFAKGEEDELRVQE--EAALLGKKQSKNKQVSQGEEQKVENTNKPWKKFKHDYKQERK 175

Query: 255 TQV 263
            Q+
Sbjct: 176 KQI 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,198
Number of Sequences: 37544
Number of extensions: 170008
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)