Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19d12
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical ... 28 4.0
U58753-3|AAC24436.1| 118|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF016667-1|AAB66088.2| 162|Caenorhabditis elegans Hypothetical ... 27 5.3
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 27 7.0
U23516-3|AAG38881.1| 218|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z82284-5|CAB05291.1| 418|Caenorhabditis elegans Hypothetical pr... 27 9.3
U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical ... 27 9.3
AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine re... 27 9.3
>AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical
protein F45C12.8 protein.
Length = 297
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 156 KINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKPGVYEAR-ITDDTVKLD 332
+ NE+F+ Q+ + F ++ E+ R + I +K + +R +T +V+ D
Sbjct: 157 RCNEDFKLMMENQSVQLDSFQLDFDDNCEQGFRDKCIDG--VKKALKSSRRVTSKSVETD 214
Query: 333 NIPFNDHAIL 362
++PF D A L
Sbjct: 215 SVPFPDIARL 224
>U58753-3|AAC24436.1| 118|Caenorhabditis elegans Hypothetical
protein W03B1.1 protein.
Length = 118
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 138 LLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQV 263
L A I N+E K K E +IKA+ + E+++RTQ+
Sbjct: 31 LKAYEIVANQERDKTKYESLEPAIKALFTLDSEHEKKVRTQL 72
>AF016667-1|AAB66088.2| 162|Caenorhabditis elegans Hypothetical
protein T20H12.1 protein.
Length = 162
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 224 CNHRFNRVFILNIFVFAKFF 165
C + FNRVF L I F KFF
Sbjct: 57 CCYLFNRVFFLEISPFFKFF 76
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 422 IYLLFGFILTAWSWCFCPIF*YSMIIERYVV*FHSVISNSCFINTWFYFSGLNHLS 255
IY L GF +T S + YSMI ++ H + S F+ F+ + LS
Sbjct: 39 IYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNLSRRLS 94
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 422 IYLLFGFILTAWSWCFCPIF*YSMIIERYVV*FHSVISNSCFINTWFYFSGLNHLS 255
IY L GF +T S + YSMI ++ H + S F+ F+ + LS
Sbjct: 42 IYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLGAVFHSNLSRRLS 97
>U23516-3|AAG38881.1| 218|Caenorhabditis elegans Hypothetical
protein B0416.4 protein.
Length = 218
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 78 QSFKKLHRTRMKVFEGDERALLAARIKINEEF 173
++FK++ R RMKV + DE+ L K N EF
Sbjct: 118 ETFKQMVRDRMKVKDVDEKLLQQYMKKENVEF 149
>Z82284-5|CAB05291.1| 418|Caenorhabditis elegans Hypothetical
protein T27E7.6 protein.
Length = 418
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELRTQVIQAREIKP 287
++ D LLA IK N K + S+K + + ++ EL T + EI P
Sbjct: 239 LESMRNDINLLLAVEIKQNGSHLVEKLIDLFESVKTVKCLMDTVQTELTTIGDEVPEITP 298
Query: 288 G 290
G
Sbjct: 299 G 299
>U58764-4|AAB00726.2| 216|Caenorhabditis elegans Hypothetical
protein M03E7.5 protein.
Length = 216
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 75 LQSFKKLHRTRMKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDIERELR 254
L++ H R K E +++ALL R N+E R N E ++ + + +++ ++
Sbjct: 85 LRTMTNRHTNRKKQAE-EKKALLKQRFTTNQETRVNLEFDEELNLNDKLKYSDNMIDQML 143
Query: 255 TQ 260
Q
Sbjct: 144 AQ 145
>AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical
protein Y38F1A.3 protein.
Length = 858
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 190 TFLFLRNSSFIFIRAANKARSSPSKTFILVLCNFLKLCKTY 68
TFL + + + + +S P + F+ V+C L LC ++
Sbjct: 233 TFLIILAFTILTTLKRDPVKSKPFEAFLGVICPILSLCASF 273
>AF016420-2|AAB65306.1| 291|Caenorhabditis elegans Serpentine
receptor, class sx protein12 protein.
Length = 291
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 226 NAIIALIEFSF*TFLFLRNSSFIFIRAANKARSSPSKTFILVLCNFLKLC 77
N I+ + +FSF + NS FI + + S S V C F LC
Sbjct: 8 NIIVTVYKFSFFVIGIVGNSLFIHLIFKKQKLRSRSTLLQCVQCAFQNLC 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,661,046
Number of Sequences: 27780
Number of extensions: 179176
Number of successful extensions: 562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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