Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d12
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.1  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 331 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 374


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 399 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 442


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 108 MKVFEGDERALLAARIKINEEFRKNKNVQNENSIKAMIAFGEDI 239
           M++ E   ++LLA  + I+++ R   +  N  S     AFG  I
Sbjct: 399 MELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPI 442


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 323 HSVISNSCFINTWFYFSGLN 264
           +++  + CFIN W   S L+
Sbjct: 668 YAIAGSQCFINIWLLGSRLD 687


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 320 SVISNSCFINTWFYFSG 270
           +V+ NSC+   + YF G
Sbjct: 93  TVLPNSCYQERYEYFPG 109


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 84  SFVKPTNKVNVIHVKQG 34
           SF+K +N V V+ ++QG
Sbjct: 112 SFLKHSNIVKVLMIEQG 128


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 320 SVISNSCFINTWFYFSG 270
           +V+ NSC+   + YF G
Sbjct: 93  TVLPNSCYQERYEYFPG 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,118
Number of Sequences: 438
Number of extensions: 2016
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)