Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19d11
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 1.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 3.6
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 4.7
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 25 6.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 6.2
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 6.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 22 7.9
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 25 8.3
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 141 PTTPRPLRRDPSLP--TSLPTYSKPDKLQVVSQEKPIS 248
PT P P P LP TSL T+S PD + +V+ + ++
Sbjct: 905 PTPPPP----PPLPVKTSLNTFSHPDSVNIVANDTSVA 938
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 96 NIKDKYENPSTSQSAPTTPRPLRRDPSLPTSLPTYSKPDKLQV---VSQEKPISSRRRFL 266
++KD Y NP +Q+ P + R +R ++ L + + L++ S K ++ L
Sbjct: 142 DLKDLYSNPMPAQTTPVSMRMTKRQRAIQGILEEGEEDELLELPPETSGRKKLTPEEMAL 201
Query: 267 KYLYNREKK 293
+ + N ++
Sbjct: 202 RRIENARRR 210
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 124 QPRRVLQQPRDLCVETHHFQRL 189
Q R + Q RDLC +T H + L
Sbjct: 57 QQREIDNQKRDLCTKTKHIEEL 78
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 90 MVNIKDKYENPSTSQSAPTTPRPLRRDPSLPTSLPTYSKPDKLQVVSQEKPISSRRRFLK 269
M+ IKD Y PS + PL++D L SKP L + + +RR
Sbjct: 539 MLRIKDPYRIPSGLNFEIVSFEPLKQDGFATLYLNCNSKPMSLGSMFEHYRKLARRLISH 598
Query: 270 YL 275
YL
Sbjct: 599 YL 600
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 114 ENPSTSQSAPTTPRPLRRDPSLPTSLPTYSKPD----KLQVVSQEKPISS 251
E+ STSQSA TT R++ L S KP + +S + PI++
Sbjct: 128 ESKSTSQSAVTTNSTRRKEKELEASKDGKIKPSSSNTRYPAISSKGPITT 177
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 120 PSTSQSAPTTPRPLRRDPSLPTSLPTYSK 206
P+T + TT P+ R+P S P SK
Sbjct: 129 PNTDSPSATTSSPISRNPEYSVSPPNGSK 157
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 84 NEMVNIKDKYENPSTSQSAPTTPRPLRRDPSLPTSLPT 197
NE ++ NPST + P+T P+ + + S PT
Sbjct: 269 NEHISPPSALTNPSTEELKPSTSLPIDQGNASVVSKPT 306
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 22.2 bits (45), Expect(2) = 7.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Frame = +3
Query: 81 SNEMVNIKDKYENPSTSQSAPTTPRPLRRDPSL------PTSLPTYSKPDKLQVVSQEK- 239
S + VN E+ S Q + T + +++ SL S D+ + V E+
Sbjct: 144 SKKPVNYNSSSESESEEQISKATKKVKQKEEEEYVEEVDEKSLKNESSSDEFEPVVPEQL 203
Query: 240 --PISSRRRFLKYLYNREKKT 296
PIS RRR N EK++
Sbjct: 204 ETPISKRRRSRSSAKNLEKES 224
Score = 21.0 bits (42), Expect(2) = 7.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 273 LYNREKKTFCGRTCK 317
L + +++ FC RTC+
Sbjct: 259 LRSMKERVFCSRTCR 273
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 216 LQVVSQEKPISSR-RRFLKYLYNR 284
L ++ +E P +S RF++Y+YNR
Sbjct: 476 LSILGEEGPKASEPTRFIRYIYNR 499
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 93 VNIKDKYENPSTSQSAPTTPRPLRRDPSLPTSLPTYSKPD 212
V+ + +E PST+ APT P S+PT + P+
Sbjct: 200 VSHQKPHEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPN 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,048
Number of Sequences: 5004
Number of extensions: 54044
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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