Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d10
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    30   0.28 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    30   0.37 
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    29   0.85 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.6  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   6.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   6.0  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 247  EWDDGLTPAPLSYFAALSLSRAFHIINPLNKILQKDVDILMDL 375
            +W +GL  A   YF   ++   F ++ PL+++L++  + L ++
Sbjct: 1828 QWHEGLEEASRLYFGDHNIEGMFAVLRPLHEMLERGPETLREI 1870


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 250  WDDGLTPAPLSYFAALSLSRAFHIINPLNKILQKDVDILMDL 375
            W +GL  A  +YF+   +S    I+ PL++ L+K    L ++
Sbjct: 1826 WYEGLEEASQAYFSDHDISLMIDIVKPLHETLEKGPSTLSEI 1867


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 481  RSTPFWTET*WHKIFSSIVHPVLAAHYISREYQPDTNPL 365
            R   +W +  WH++F  +++P L   ++S E  P T  L
Sbjct: 976  RMKRYWNQDLWHRLFDLLLNPTL---HVSEENLPMTEEL 1011


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +1

Query: 160 QNTREAYATSHEMKTSIAEAKRKIVAEDFE------WDDGLTPAPLSYFAALSLSRAFHI 321
           +++REA     E++  I EAK++ +  D        WD         +   L+ S  ++I
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180

Query: 322 INPLN 336
           IN LN
Sbjct: 181 INKLN 185


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 286 FAALSLSRAFHIINPLNKILQKDVDILMDLY 378
           + A+ + R   ++NP N+   K  D+ MDL+
Sbjct: 61  YGAIKVVRPSSVLNPWNEDTMKPSDVKMDLW 91


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 376 YPADIPLKCSVPLIQDEQYWKRSYATKFPSRKELNVPFWKGKFLSACLQDYLEN---VNP 546
           YP     K   P  + E+        +     E+N  F   KF S  ++ Y +N   V P
Sbjct: 151 YPESAIQKVVDPATKQEKRVSMETGKEVQWSSEMNYHFLLSKFQSRLIEHYNKNPNFVQP 210

Query: 547 DVFIEEDAVELATLVS 594
            +F  +   EL T +S
Sbjct: 211 SIFHTQVLEELKTGIS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,376
Number of Sequences: 5004
Number of extensions: 64282
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)