Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d10
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    30   1.5  
07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600...    30   2.0  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   2.7  
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    28   6.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   8.3  

>02_04_0611 + 24347384-24350015,24350126-24350497,24350561-24350805,
            24350997-24351059,24351919-24352422
          Length = 1271

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163  NTREAYATSHEMKTSIAEA-KRKIVAEDFEWD-DGLTPAPLSYFAALSL 303
            NTRE     H +KTS AEA KR+IV   FE D D L   P +Y   L +
Sbjct: 979  NTREIAIKLHAIKTSYAEATKREIVG--FECDVDELPNRPSAYTDTLDV 1025


>07_03_0254 +
           15857809-15858018,15858151-15858264,15859809-15860010,
           15860245-15860319,15860406-15860498,15860554-15860636,
           15861067-15861180,15861632-15861746,15861840-15862030,
           15862102-15862218,15862514-15862594,15862729-15862964,
           15863219-15863258,15863393-15863968
          Length = 748

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 529 LENVNPDVFIEEDAVELATLVSPYIYELGLN 621
           LEN  P V I     + A  ++P +YELG N
Sbjct: 274 LENGKPQVVITSRVADAALFLAPMVYELGWN 304


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 249 FEIFSHNFTLGFSNRSLHFMRCSVSFPCILGY 154
           F +  H+   GF   + HF  CSV F C LG+
Sbjct: 203 FSVQPHHGASGFGRSASHF-GCSVEFSCFLGH 233


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 192 MRCSVSFPCILGYKIWNLHDWVLFICLRILI 100
           + CS++   + G K+W LH W   + + +LI
Sbjct: 377 LACSLTIKALSGKKVWGLHLWKWELLVFVLI 407


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 156 YKIWNLHDWVLFICLRILIKNCNSLWSLVIEEEN 55
           + ++ +  W L   +R+ +K  +S+W +V+  EN
Sbjct: 144 FHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPEN 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,766
Number of Sequences: 37544
Number of extensions: 373592
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)