Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d09
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    31   0.90 
01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865     29   2.7  
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028     28   8.4  

>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 265 KNYSHEASESKESYFTTNLCCRPHLEVIVNL--FLLCVLHIASKL 137
           K   H AS    + FTTN CCR  L+ ++ +   LL +L +  +L
Sbjct: 287 KKVHHRASTGTTTTFTTNCCCRIRLQGMLQVPNLLLLLLQLLQEL 331


>01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865
          Length = 358

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
 Frame = -1

Query: 421 ISYKRNQHYAHSGSINRYQLASHFCISGPNARRPTRFQHSHFVFFLTTLFNVKNYSHEAS 242
           ++ +R   YA S   +R    S   +S PN    T+F ++     L   F +K++S +A+
Sbjct: 52  LNRERRSRYAGSCLFSRKDFLSRVDVSNPNLYVITKFIYAMCTVSLPDAFMIKSWS-KAA 110

Query: 241 ESKESYFTTNLCCRPHLEVI--VNLFLLCVLHIASKLYVNLEPTLVYNK 101
            SK+S +   +      E++   +    CV      +Y + +P   YNK
Sbjct: 111 WSKQSNWMGFVAVATDEEIVRPGSADDPCVHGGWLSVYTSADPESQYNK 159


>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
          Length = 444

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 325 RPTRFQHSHFVFFLTTLFNVKNYSHEASESKES 227
           RP R+Q   F+F LT   N+K  + E  + +E+
Sbjct: 376 RPQRYQKELFIFLLTQATNLKKMAVEFPKDQEA 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,644
Number of Sequences: 37544
Number of extensions: 312554
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)