Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d09
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82086-7|CAB04996.1|  294|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    30   1.9  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U21107-1|AAA85118.1|  387|Caenorhabditis elegans MAP kinase kina...    27   9.9  
AC024811-4|AAF60779.1|  387|Caenorhabditis elegans Map kinase ki...    27   9.9  

>Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B5.7 protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -1

Query: 439 IASVHLISYKRNQHYAHSGSINRYQLASHFCISGPNARRPTRFQHSHFVFFLTTLFNVKN 260
           I + HL  YKR+ H     S+ RY      C    N  R     H+  V  L    +VKN
Sbjct: 180 IKAYHLDYYKRSNHAIIHTSLQRYICPVKNC-GTKNRHRSNMVVHARTVHGLQGKVDVKN 238

Query: 259 --YSHEASESKESYFTTNLCCRPHLE 188
               HE  E K     T L C P +E
Sbjct: 239 CLLPHEDEELK----MTVLTCFPEME 260


>Z82086-7|CAB04996.1|  294|Caenorhabditis elegans Hypothetical
           protein ZK228.4a protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 550 NGHRHQHMDERFYITMARNNGIHHSISIHFWSLAAGWILYLFGRHIC 690
           NG  HQ  D RFY T   NN +   +S+  W       LY  G + C
Sbjct: 23  NGWAHQAYDYRFYSTKEFNN-LVAGVSLARWDAKNDGPLYSIGLYYC 68


>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 295 VFFLTTLFNVKNYSHEASESKESYFTTNLCCRPHLEVIVNLFLLCVLHIASKLYVNLEP 119
           V  L T+F  KN  H  + S    +TT        E +VN++  CV    S+L+ ++ P
Sbjct: 47  VLILNTIFKSKNKEHYRNNSFYILYTT--------EAVVNIYTSCVAVFFSRLFSDVTP 97


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 535 NFFNFNGHRHQHMDERFYITMARNNGIHHSIS 630
           +F +  GH+  H DE   +T + +NGI  + S
Sbjct: 335 DFSSPQGHKRHHSDEHVRVTSSMSNGIERNES 366


>U21107-1|AAA85118.1|  387|Caenorhabditis elegans MAP kinase kinase
           protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 580 RFYITMARNNGIHHSISIHFWSLAAGWILYLFGRH 684
           R Y+   R  G H++IS   WS     +  L GR+
Sbjct: 232 RSYMAPERLTGSHYTISSDIWSFGLSLVELLIGRY 266


>AC024811-4|AAF60779.1|  387|Caenorhabditis elegans Map kinase
           kinase or erk kinaseprotein 2 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 580 RFYITMARNNGIHHSISIHFWSLAAGWILYLFGRH 684
           R Y+   R  G H++IS   WS     +  L GR+
Sbjct: 232 RSYMAPERLTGSHYTISSDIWSFGLSLVELLIGRY 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,963
Number of Sequences: 27780
Number of extensions: 308000
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)