Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d09
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.40 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 502 NNIYNNIDTVDNFFNFNGHRHQHMDERFY 588
           NN YNN +  +N+ N+N + + +  + +Y
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 493 NIWNNIYNNIDTVDNFFNFN 552
           N +NN YNN +  +N +N N
Sbjct: 328 NNYNNNYNNYNNYNNNYNNN 347


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 589 ITMARNNGIHHSISIHFWSLAAGWILYL 672
           + +ARN  +H + + + +SLA   +L L
Sbjct: 76  VVIARNKSMHTATNYYLFSLAVSDLLLL 103


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 607 CCEPW*YKTSHP 572
           C +PW Y  +HP
Sbjct: 330 CIDPWIYAINHP 341


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 607 CCEPW*YKTSHP 572
           C +PW Y  +HP
Sbjct: 330 CIDPWIYAINHP 341


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 577 ERFYITMARNNGIHHSISI 633
           ++ ++TM R NG+  S+++
Sbjct: 74  DKIFVTMLRYNGVPSSLNV 92


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 577 ERFYITMARNNGIHHSISI 633
           ++ ++TM R NG+  S+++
Sbjct: 74  DKIFVTMLRYNGVPSSLNV 92


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 577 ERFYITMARNNGIHHSISI 633
           ++ ++TM R NG+  S+++
Sbjct: 74  DKIFVTMLRYNGVPSSLNV 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,789
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)