Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   7.1  
SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual        25   9.4  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   9.4  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   9.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 458 CNLPESSEGQNKLFLKTINIKNKHR 384
           C L  S + +NKLF + +NIK   R
Sbjct: 792 CTLECSQQQRNKLFAEALNIKTDRR 816


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 598 RLEILLLHSKGNRSENTQAFC 536
           R +ILLL +  NRSEN   FC
Sbjct: 555 RPQILLLINNPNRSENVIRFC 575


>SPAC9E9.17c |||dubiuos|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 585 YSCIQKETDLKILRLFV*DFHEFSLAVNE 499
           +S IQK+ +L +L +   DF+  +L V E
Sbjct: 33  FSVIQKDEELNVLEINFNDFYRTTLNVGE 61


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 104 GILLIARFFLHNARCNNVRKKKKTVNFV 21
           G+ + +R  L   +C NV+ +K T NF+
Sbjct: 455 GVFMKSRTLLIKEKCLNVQLEKDTPNFI 482


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 559 IGFLLNARVIFLVLLRLPKQRKF 627
           +G+ L ARVI+  L  L K+++F
Sbjct: 573 VGYSLGARVIYYCLRELEKKKEF 595


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 479 RNENYSICNLPESSEGQNKLFLKTINIKNKHRL 381
           R +NY    +P+S + +N  F K + +   H +
Sbjct: 371 RFKNYKSAYIPKSDKNENSFFKKDVGLGMMHAI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,266
Number of Sequences: 5004
Number of extensions: 43225
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)