Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d08
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0557 + 20441067-20441397,20441415-20442340                       28   5.6  
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           28   7.4  
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164...    27   9.7  
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169...    27   9.7  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    27   9.7  

>12_02_0557 + 20441067-20441397,20441415-20442340
          Length = 418

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 646 GNIHPDRISFV-LANVIRLEILLL--HSKGNRSENTQAFCL 533
           G +HPDR+ F   A V R++ L L  H  GN  ++  A  L
Sbjct: 348 GMVHPDRLRFAGAATVRRIKKLFLFTHGSGNDGDDANAAAL 388


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 122 LVISQTKTMTSIL*RSPYSLRKGTIRASHGCCQTLELISPRQYQAARQGDSRQY*CSNEK 301
           L I  TKT + +  +  Y+L  G++    G     + I P     A +  S +   S  K
Sbjct: 301 LAIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVK 360

Query: 302 CVA*TPVRY 328
            VA  PV Y
Sbjct: 361 AVANDPVAY 369


>12_01_0217 +
           1647319-1648327,1648462-1648577,1648650-1648817,
           1648911-1649038,1649121-1649220,1649329-1649433
          Length = 541

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 449 PESSEGQNKLFLKTINIKNKHRLTVFNV 366
           P+ S G   L  K +NI  K RLT F V
Sbjct: 308 PKISSGAKDLVRKMLNINPKERLTAFQV 335


>11_01_0216 +
           1693889-1694897,1695034-1695149,1695222-1695389,
           1695482-1695609,1695692-1695791,1696124-1696168
          Length = 521

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 449 PESSEGQNKLFLKTINIKNKHRLTVFNV 366
           P+ S G   L  K +NI  K RLT F V
Sbjct: 308 PKISSGAKDLVRKMLNINPKERLTAFQV 335


>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 517 KFMKILNKKPEYFQIGFLLNARVIFLVLLRLPKQR 621
           K + I N++PE  QI    N  +  + LL LPK R
Sbjct: 604 KLVSIFNQRPEQKQIYVSQNGFLPLMELLELPKNR 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,553
Number of Sequences: 37544
Number of extensions: 233980
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)