Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d04
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    28   1.2  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    26   4.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.3  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 372 RHQLQHVCSWHDISDSLRNQGHGRHHDILPGEVSFELPPEDT 497
           + +   + S  +IS +L   GHGRH  +LP E + +L  E+T
Sbjct: 353 KEEFGDMVSDEEISKALAKYGHGRHGIVLP-ESAKQLELEET 393


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 357 RKRKLRHQLQHVCSWHDISDSL 422
           R+  L+  L+++CS HD++D L
Sbjct: 44  RQNLLKIDLKNICSLHDLTDQL 65


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +1

Query: 166  NIPGLLKVGDKIEIGGKIKENARKMSVNLCAQ 261
            N+P  + + +  ++  K +++ +++S+ LC Q
Sbjct: 4420 NLPAAMPIDEARDLWNKHEDSTKQLSIELCEQ 4451


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 226 NARKMSVNLCAQEGE----EPRDVVLHFDVRFHRDNIISLSRKN 345
           N+ KM    C ++G+       D VL + V FH  N+ +LSR +
Sbjct: 268 NSGKMQKKECDKKGKFFEAYAVDAVLCYTVAFHLQNLSNLSRNH 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,075
Number of Sequences: 5004
Number of extensions: 57501
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)