Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19d03
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.49
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.5
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 27 3.5
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 3.5
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 3.5
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 26 4.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.1
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.0
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 107 ENIEICEQDNRVFDVTQAQ-ELINKLEDYKCSSVDLEKQLLELETE 241
+N E + ++ + T Q ELIN LE K S + LEKQLLE E
Sbjct: 285 QNKEQSSEGSKTANQTHEQKELINSLEK-KVSDIALEKQLLEEAVE 329
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 173 NKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 277
NKL+ K SS LE+Q+ + +E+ + E+ES++
Sbjct: 859 NKLQIIKSSSSGLEEQMQRINSEISDKRNELESLE 893
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 328 FKASILSAPAATRSGGTLHGLHFDLDVPH 242
F SILS A +GG LH D DV H
Sbjct: 17 FHTSILSPRCAFHNGGILHKKAKDKDVKH 45
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 701 STASVP*RSPPVRTLALWTPSTY-WCALQDLRISSPTPSA 585
ST +P +PP +TL L+TP Y C L L T SA
Sbjct: 2 STPLIP-PAPPKKTLQLYTPQYYGLCTLGGLLACGTTHSA 40
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +2
Query: 83 QDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRH 250
+++ + EN++ E+D+ DVT A L NK DY SV + + L ++++++
Sbjct: 340 EESEFMDSENVDD-EEDDDFLDVTTATSLQNKSTDY--GSVKRKTENLNSDSDIQN 392
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 QELINKLEDYKCSSVDLEKQLLELETEVR-HIQVEMESVK 277
++L N LE Y+ L+ QL+ LE ++R ++ E+ESVK
Sbjct: 17 RQLGNLLEQYEVEIARLKSQLV-LEKKLRIQVEKELESVK 55
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +2
Query: 431 EKEAQKLGIQLRQTEENFKTKVTECAMLRAXXXXXXXXXXXXRCQHRETQNKLRELEMKF 610
EKE Q ++L + +EN ++ VT + + + + T++K ++ F
Sbjct: 342 EKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKEEVIGRAKGETDTTKSKFEDIVKTF 401
Query: 611 EGLATHTNMLMGSKEQAFEQEVNVRALKQC---YRE 709
+G + N + K + + ++ A K C YRE
Sbjct: 402 DGYRSEMNDVDIQKR---DIQNSINAAKSCLDVYRE 434
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -3
Query: 374 RTLSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQTN 195
R L +S +++ KY RD+L+ + AP S TP S D+ N
Sbjct: 42 RQLPSSTSKDEDSEEASHKYDFEIDRDSLKSDSGSPRLHQNATAPTSSTP-LQSPDESVN 100
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 137 DYPVRKFLYFHDFRICCPGLQRRRHPYFVHFFYNY 33
+YP ++F H R LQ +H YF+HF +Y
Sbjct: 601 NYPTQEF---HLLRPTIKILQISKHEYFLHFSSSY 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,999
Number of Sequences: 5004
Number of extensions: 37135
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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