Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d02
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.5  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   7.9  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 493 RTTILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLI 672
           R   LN+++N L   P+ +               I  L   S   L  L VL +  NRL 
Sbjct: 76  RLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLP-ESFGALMNLKVLSISKNRLF 134

Query: 673 EIPT 684
           E+PT
Sbjct: 135 ELPT 138



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 463 LTEFPTPLDVRTT--ILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPG 636
           L EFP  L    +  IL++  NK+  +P+   +             +  L    ++ +P 
Sbjct: 87  LREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPT-YIAHMPN 145

Query: 637 LTVLKLGNNRLIEIP 681
           L +LK+ NN ++  P
Sbjct: 146 LEILKIENNHIVFPP 160


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 653 SFKTVKPGSSLTEPKSKPMI 594
           SF T KP SS  E K KP++
Sbjct: 179 SFVTEKPASSEKEDKEKPLV 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,162
Number of Sequences: 5004
Number of extensions: 47154
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)