Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19d01
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 684 FSFXNVLSFVPFSFVSLYFAF*QHLLE-LYGISTSL 580
           F+F N++ FVP  +++  + +  H+L  L G+S+ L
Sbjct: 507 FTF-NIIKFVPVKYLTYEYPWWSHVLGWLCGLSSML 541


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 684 FSFXNVLSFVPFSFVSLYFAF*QHLLE-LYGISTSL 580
           F+F N++ FVP  +++  + +  H+L  L G+S+ L
Sbjct: 560 FTF-NIIKFVPVKYLTYEYPWWSHVLGWLCGLSSML 594


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 650 FHLFLYISPFNNIFSNFTA 594
           F LFLY+SP ++ ++ + +
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 650 FHLFLYISPFNNIFSNFTA 594
           F LFLY+SP ++ ++ + +
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 237 TMETKLFVKIFLSNQYVMNLMKIKPFXTENY 329
           T + + FV++ +S++ +    KI+ F  E+Y
Sbjct: 61  TRQVEDFVRLLMSSEELRLFDKIRVFLDEDY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,766
Number of Sequences: 438
Number of extensions: 3305
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)