Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c24
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    54   2e-08
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    29   0.63 
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.4  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.8  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   7.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   7.8  

>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 37/116 (31%), Positives = 63/116 (54%)
 Frame = +3

Query: 339 LALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYY 518
           L ++ML +G  N++ +K+ D +    ++  E   +   LQ+L++FLGE  CL  + L   
Sbjct: 3   LPIIMLTSGVANTVLSKYQDSI----AEESEPIKSMAVLQSLNIFLGEA-CLWFYVLYKR 57

Query: 519 KTRNTGGHSLTAGTQNFNPLILMPAAMLDLIGTSIMYIGLTLTYISSFQMFRGSII 686
            ++  G  SL          + +PA M D+ G+++M +GL  T  S +QM RGS+I
Sbjct: 58  HSQGPGYESLDHLPLKHKVFMALPAIM-DICGSTLMNVGLLYTSASIYQMTRGSLI 112


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 248 KITVNLKLEETLILLVTFIKQDGLDILPEVPRPDDV 355
           K+ +NLK+  T +L +T I   GL  +P   +P D+
Sbjct: 151 KLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDI 186


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 348 MMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYY 518
           ++L   + N +  K  DIL         R++ H FL  L  F G  + ++  +L YY
Sbjct: 110 ILLPVNATNGVGEKGFDILSFSNVKNHNRFYAHVFLSWL--FFGFTIFIIYRELRYY 164


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 209 NRIKKCDNLTYDYKITVNLKLEETLILLVT 298
           N+I++  +L YD K+  ++ LEE  +  V+
Sbjct: 21  NKIRRAPSLLYDPKVAADMDLEEIYVTAVS 50


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +3

Query: 327 YQKFLALMMLV---TGSINSLSTKWADILKSKGSDGEERYFN---HPFLQTLS 467
           Y K L LM+ V   T  +NS + ++ + L+S+GS+    Y N    P L++L+
Sbjct: 622 YGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLN 674


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 297 PLLSKMAWTYYQKFLALMMLVTGSINS 377
           PLL+K  W YY    A ++L   ++NS
Sbjct: 193 PLLTKKYWDYYLFKKAFLILEDANLNS 219


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 393 ADILKSKGSDGEERYFNHPFLQTLSMFLGEMLC 491
           +++L SK  D   +YF    L  L +F+  +LC
Sbjct: 25  SNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLC 57


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 339 LALMMLVTGSINSLSTKWAD 398
           +A +++  G +NSLST+W D
Sbjct: 193 MAAVIVFHGLVNSLSTRWLD 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,355
Number of Sequences: 5004
Number of extensions: 62615
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)