Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c24
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score =  107 bits (256), Expect = 1e-23
 Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 15/131 (11%)
 Frame = +3

Query: 339 LALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVY- 515
           +++MM+VTGS+N++  KWAD +K+ G       FNHPFLQ   MF GE LCL+VF L++ 
Sbjct: 8   ISVMMVVTGSLNTICAKWADSIKADGVP-----FNHPFLQATCMFFGEFLCLVVFFLIFG 62

Query: 516 YKT-----RNTGGHS--LTAGTQN-------FNPLILMPAAMLDLIGTSIMYIGLTLTYI 653
           YK       N  G S  +T  T         FNP +  P A+ D++GTSIMYIGL LT  
Sbjct: 63  YKRYVWNRANVQGESGSVTEITSEEKPTLPPFNPFLFFPPALCDILGTSIMYIGLNLTTA 122

Query: 654 SSFQMFRGSII 686
           SSFQM RG++I
Sbjct: 123 SSFQMLRGAVI 133


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 312 MAWTYYQKFLALMMLVTGSINSLST 386
           ++WT +   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 312 MAWTYYQKFLALMMLVTGSINSLST 386
           ++WT +   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +3

Query: 420 DGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYYKTRNTGGHSLTAGTQNFNPLILMPAAM 599
           +GEE Y      +  S F  E+  L V K+   KT +  GH +  G   ++P IL P   
Sbjct: 7   NGEEPYMQFSNFKLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGL--YDP-ILGPDNT 63

Query: 600 LDLIGTSIMY 629
            D+  T   Y
Sbjct: 64  FDMCMTCNQY 73


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +3

Query: 420 DGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYYKTRNTGGHSLTAGTQNFNPLILMPAAM 599
           +GEE Y      +  S F  E+  L V K+   KT +  GH +  G   ++P IL P   
Sbjct: 7   NGEEPYMQFSNFKLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGL--YDP-ILGPDNT 63

Query: 600 LDLIGTSIMY 629
            D+  T   Y
Sbjct: 64  FDMCMTCNQY 73


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 511 TNLNTSKHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISAHF 386
           T+++T+K  +  K+ D  C NGW  +  + ++PF F + + +
Sbjct: 429 TSMSTTK-KVCAKS-DLKCANGWTSFNRTSTNPFCFKVISSY 468


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
           protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +3

Query: 420 DGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYYKTRNTGGHSLTAGTQNFNPLILMPAAM 599
           +GEE Y      +  S F  E+  L V K+   KT +  GH +  G   ++P IL P   
Sbjct: 7   NGEEPYMQFSNFKLRSYFPHEIDKLSVLKITQTKTFDEVGHPIAGGL--YDP-ILGPDNT 63

Query: 600 LDLIGTSIMY 629
            D+  T   Y
Sbjct: 64  FDMCMTCNQY 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,558
Number of Sequences: 27780
Number of extensions: 339673
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)