Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c24
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 512 VLQNTEHWGTFINSWNTKLQ 571
           V+  TE W +FIN W  KL+
Sbjct: 385 VVLETE-WSSFINPWTKKLE 403


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 257 VNLKLEETLILLVTFIKQDGLDILPEVPRPDDVGD 361
           V+L+    +  L+  IK++  DILPEV   + +G+
Sbjct: 554 VSLRFYNVVYKLIDNIKKEIYDILPEVDVEEILGE 588


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 512 VLQNTEHWGTFINSWNTKLQ 571
           V+  TE W +FIN W  KL+
Sbjct: 91  VVLETE-WSSFINPWTKKLE 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 484 ISPKNIDKVCKNGWL 440
           +SP   D +C NGW+
Sbjct: 365 LSPSIHDNICSNGWI 379


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 278 TLILLVTFIKQDGLDILPEVPRP 346
           T +L +TF+  +    LP+VP P
Sbjct: 251 TTVLTMTFLGLEARTDLPKVPYP 273


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 533 WGTFINSWNTK 565
           WG+  N WNTK
Sbjct: 98  WGSCNNYWNTK 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 487 YVYLCSNWCITKHGTLGDIH 546
           Y YL  +  +T  G L D+H
Sbjct: 28  YTYLVRSRTLTSLGDLSDVH 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,832
Number of Sequences: 438
Number of extensions: 4291
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)