Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c23
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 30 0.22
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 28 0.91
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 2.8
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.8
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 6.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 6.4
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc... 25 6.4
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 25 6.4
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 25 6.4
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 30.3 bits (65), Expect = 0.22
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Frame = +2
Query: 119 EEVIHQTALKLAEEIKNLSIYKSFYNDV-QKLVASPNVKKEDFKQTL---QQAMKEKGLD 286
+E + L++ E +K +S +S ++ Q++ + ++ E FK T QQ + + L+
Sbjct: 215 KERAEKIELRVHESLKRISCIRSKVEELDQEITETARLQDELFKSTEEYEQQMITIRHLE 274
Query: 287 TK--LRNTVFHWVRTQ-----SKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLA 445
++ + NT + +++Q L+ L S + E+ ++KSL SDLE+ L
Sbjct: 275 SQSDIINTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLK 334
Query: 446 KIRPQSEQ 469
R E+
Sbjct: 335 SRRELLEK 342
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 28.3 bits (60), Expect = 0.91
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -1
Query: 525 FVKSKLYVLNS-FHLSANSSCS--LCGRIFANDVSRSEHMEFNDLCILFSHCALAFDSEV 355
F+ L LN+ FH + SS L R F D +R ++ ND+C+ + L F ++
Sbjct: 612 FIYFSLVPLNNLFHRAYKSSSRTHLANRYFTADYAR---LQINDMCVSWGLWLLVFGAKF 668
Query: 354 KGSNLFCLLCVR 319
S F L R
Sbjct: 669 TESYFFLSLSFR 680
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 446 KIRPQSEQDELADKWNELSTYNLDLTKYRPVYA 544
+++P+ + ++AD W ++S N+ K R VY+
Sbjct: 89 ELKPELQGMDIADIWTQVSKANISERKIRCVYS 121
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 182 KSFYNDVQKLVASPNVKKEDFKQTLQQAMK--EKGLDTKLRNTVFHWVRTQSKQNKL 346
K +ND ++ N + +DF +T + A K + LD + R +W + K+N L
Sbjct: 501 KEIFNDESVVLFLLNPELDDFDETKRTAQKIATEFLDEEGRTYQSNWQKETDKKNSL 557
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 470 PVRFVAVF-SLMTFRDLNTW-NLTICVFSSPIVRSLLIVKLKDLIYSVYFAFEP 315
PV +AVF +L T R L W L + P + SLL L L+YS++ + P
Sbjct: 460 PVGAIAVFINLDTIRRL--WPELGRMIEDLPFLNSLLRTFLPTLVYSLFISISP 511
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +2
Query: 155 EEIKNLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQAMKEKGLDTKLRNTVFHWVRTQSK 334
E+I ++S + + + L+ S + KE + Q+ + L + L +FH ++ K
Sbjct: 427 EDIASVSRFIATIYSICMLIFSED--KEQSSISFQEFVSFSPLSSTLNFALFHQAASKLK 484
Query: 335 QNKLDPLTSLS-KASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADK 487
K PL+ ++ K +A +++K L + SD+ + +P+ ++ D+
Sbjct: 485 TGK-SPLSIVTDKTTASLTYKMYKDLTNDYSDIYMIMDIWKPKRKRKTKKDQ 535
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.8
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +2
Query: 182 KSFYNDVQKLVASPNVKK-EDFKQTLQQAM--KEKGLDTKLRNTVFHWVRTQSKQNKLDP 352
+S+ N+V + S +K+ E K ++ + + L T + + + +D
Sbjct: 537 ESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTARMKLADKYPQGDNTSENIDW 596
Query: 353 LTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADKWNE 496
L S + E I L C ++ +A I+P S + +LA W +
Sbjct: 597 LKH-SLRDSNTENSIPSPLTFACKEIRKLVADIKPVSVEKQLALNWKK 643
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 329 SKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELA--DKWNELS 502
+ Q+K D LTS+ K +H+S++S+ ++ LAKI + E EL D+ +
Sbjct: 411 TSQSK-DSLTSIVGDLESKIKSLHESVSSLDTERADLLAKINEKIESLELEKHDQQKKRL 469
Query: 503 TYN 511
TY+
Sbjct: 470 TYS 472
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 566 KLLKNLSERKLAGTLLNLNCMCSIHSIYQLI 474
K NLSER + LLN + S +S+ LI
Sbjct: 798 KNTNNLSERNASSNLLNSSLFSSFNSVNPLI 828
>SPCC338.04 |cid2||caffeine induced death protein
Cid2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 167
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 332 KQNKLDPLTSLSKASAQW---EKRIHKSLNSMCSDLETSL 442
K K+D LS SA+W E ++H++ C +++ L
Sbjct: 21 KARKIDDTIQLSLNSAKWEYPEGKVHETQEERCQNVKKKL 60
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 600 LVNGTYPDSVNKTSKKSFGA*TGRYFVKS 514
+V G YP+S S F TG+ FV S
Sbjct: 125 IVTGLYPESHGIVSNNFFDPVTGKQFVNS 153
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 395 IHKSLNSMCSDLETSLAKIRPQSEQDELADKWNE 496
+ S++ +DL + ++R + + ELA KW E
Sbjct: 59 LETSISKDSADLNLPVPRLRVKGKPQELAQKWAE 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,621
Number of Sequences: 5004
Number of extensions: 46543
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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