Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte19c23
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 33 0.13
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 31 0.70
12_02_0313 + 17404002-17406410 31 0.93
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 31 0.93
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 31 0.93
12_02_0312 + 17395716-17398112 30 1.2
04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215 29 2.2
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 29 2.8
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 29 2.8
02_04_0076 - 19486360-19488723 29 3.8
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 29 3.8
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 28 5.0
06_01_1188 + 10219546-10219664,10220855-10223660 28 5.0
02_01_0208 + 1397729-1397753,1397970-1398081,1398171-1398231,139... 28 5.0
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 28 5.0
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 27 8.7
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 27 8.7
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 33.5 bits (73), Expect = 0.13
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Frame = +2
Query: 146 KLAEEIKNLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQA---MKEKGLDTKLRNTVFHW 316
+L +K+ Y +F+N + ++ N++ E K+T+Q A ++++ +LRN
Sbjct: 86 ELQRLLKDKEAYNAFFNSLDQVKTQNNLRDELRKETVQLARENLEKEQRILELRNQC-TI 144
Query: 317 VRTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQ--DELADKW 490
+RT D L L + + + S ++ L+ S+AK+ +SE+ + +K
Sbjct: 145 IRTTELAAAQDRLAELERQKDEIMRSY--SPAALLDKLQKSMAKLDEESEELHQKFLEKD 202
Query: 491 NELSTYNLDLTKYRPVYAPKDFLEV 565
+L T+ K R Y + L +
Sbjct: 203 IDLPTFVQKYKKLRAAYHKQALLHL 227
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 194 NDVQKLVASPNVKKEDFKQTLQQAMKEKGLDTKLRNTVFHWVRTQSKQNKLDPLTSLSKA 373
+D++K+ A+ +V E T+ A+++ G WV + K+N+LD S
Sbjct: 164 SDIRKICAAVDVADEGIV-TVMLAVEKIGRVAFAAAGDDDWVISTWKENQLDNALSFQGG 222
Query: 374 SAQWEKRIHKSL 409
S W+ IH S+
Sbjct: 223 SCMWDGLIHASV 234
>12_02_0313 + 17404002-17406410
Length = 802
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/91 (25%), Positives = 35/91 (38%)
Frame = +2
Query: 287 TKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSE 466
T LR VF V + + + L L QW +I NS+C + ++ E
Sbjct: 566 TLLRVLVFSEVEFEELPSSIGNLKHLRYLDLQWNMKIKFLPNSLCKLVNLQTLQLAWCKE 625
Query: 467 QDELADKWNELSTYNLDLTKYRPVYAPKDFL 559
+EL L + + + Y PKD L
Sbjct: 626 LEELPKDVKRLVSLRYLILTSKQQYLPKDAL 656
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 30.7 bits (66), Expect = 0.93
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Frame = +2
Query: 104 MDGVKEEVIHQTALKLAEEIKNLSIYKSFYNDVQKLVASP-NVKKEDFKQTLQQAMKEKG 280
MD ++ E + + + E +L++ S+ D+ L N K F++T +K G
Sbjct: 12 MDLMRSEAMQLVQVIIPAESAHLAV--SYLGDLGLLQFKDLNADKSPFQRTYASQIKRCG 69
Query: 281 -LDTKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRP 457
+ KLR + R Q + + T S S + + L +LE L ++
Sbjct: 70 EMARKLR-----FFREQMSKAAIATSTQFSGTSLEID-----DLEVKLGELEVELTEVN- 118
Query: 458 QSEQDELADKWNELSTYNLDLTKYRPVYAPKDFLEVLLTLSGYVP 592
+ D+L +NEL YN+ L K V P ++ L +LSG VP
Sbjct: 119 -ANNDKLQRTYNELVEYNIVLQK-EMVTDPSKQVK-LGSLSGLVP 160
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 30.7 bits (66), Expect = 0.93
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Frame = +2
Query: 161 IKNLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQA---MKEKGLDTKLRNTVFHWVRTQS 331
+K+ Y +F+N + ++ N++ E K+T+Q A ++++ +++RN +RT
Sbjct: 121 LKDKEAYSAFFNSLDQVKTQNNLRDELKKETVQLARDNLEKEQRISEIRNQC-TIIRTTE 179
Query: 332 KQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQ--DELADKWNELST 505
D L L + + K S ++ L+ +AK+ +SE+ + +K +L T
Sbjct: 180 LAAAQDRLADLERQRDEVMKSY--SPAALLDKLQKLMAKLDEESEELHQKFLEKDIDLPT 237
Query: 506 YNLDLTKYRPVYAPKDFLEV 565
+ K R Y + L +
Sbjct: 238 FVQKHKKLRTAYHKQALLHL 257
>12_02_0312 + 17395716-17398112
Length = 798
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/91 (24%), Positives = 35/91 (38%)
Frame = +2
Query: 287 TKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSE 466
T+LR VF V + + + L L QW +I NS+C + ++ E
Sbjct: 562 TRLRILVFSEVEFEELPSSIGNLKHLRYLDLQWNMKIKYLPNSLCKLVNLQTLQLAWCKE 621
Query: 467 QDELADKWNELSTYNLDLTKYRPVYAPKDFL 559
+EL L + + + Y P D L
Sbjct: 622 LEELPRDVKRLVSLRYLILTSKQQYLPNDAL 652
>04_04_1180 - 31519713-31521419,31522308-31522533,31524097-31524215
Length = 683
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 404 SLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTKYRPVYAPKDFLE 562
S+N C E ++ + +P S + A WN LST N Y + PK +E
Sbjct: 135 SVNRSCIVTEGTVVQAKPVSHNGK-AKHWNSLSTLNNQKCSYELLSDPKKNVE 186
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 317 VRTQSKQNKLDPLTSLSK-ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADKWN 493
+ +S NK+ L + S+ WE + + CSD E+ L + P + ++
Sbjct: 296 INPESDNNKVQYQYQLGEFMSSCWEPVMRQEPQDACSDSESDLTESSPDASMTDIIPMLE 355
Query: 494 ELSTYNLDLTKYRPVYAPKDFL 559
EL +DL P +D L
Sbjct: 356 ELHPL-IDLQTGHPSLVSRDNL 376
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +2
Query: 317 VRTQSKQNKLDPLTSLSK-ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADKWN 493
+ +S NK+ L + S+ WE + + CSD E+ L + P + ++
Sbjct: 1343 INPESDNNKVQYQYQLGEFMSSCWEPVMRQEPQDACSDSESDLTESSPDASMTDIIPMLE 1402
Query: 494 ELSTYNLDLTKYRPVYAPKDFL 559
EL +DL P +D L
Sbjct: 1403 ELHPL-IDLQTGHPSLVSRDNL 1423
>02_04_0076 - 19486360-19488723
Length = 787
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 452 VFSLMTFRDLNTWNLTICVFSSPIVRSLLIVKLKDLIY 339
VF M +DL +WN+ I ++ + +V +DL+Y
Sbjct: 263 VFDEMNAKDLVSWNIVIQCYADNLCDEEALVHFRDLMY 300
>01_06_1480 - 37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 483 SANSSCSLCGRIFANDVSRSEHMEFNDLCILFSHCALAFDSEVKGSNLFCLLCVRTQWKT 304
SA C +CG + D S H N LC++ S + +++ K L L C + ++ +
Sbjct: 1239 SARDMCYICGTVETYDQSNGFHKLSNYLCMIVS--KIIYENGDK--ELVRLECQKWEFIS 1294
Query: 303 VFLNFVSN-PFSFIACCS 253
++ V + P S CCS
Sbjct: 1295 DTISTVKDIPNSHPRCCS 1312
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 329 SKQNKLDPL-TSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDE 475
S + +LD L L++ A W KR HK + ++ D++ L + Q E
Sbjct: 227 SAKKQLDHLFKKLTEEKAAWRKREHKKVQAILEDMKADLEHEKKNRRQLE 276
>06_01_1188 + 10219546-10219664,10220855-10223660
Length = 974
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -2
Query: 491 SIYQLIRPVRFVAVFSLMTFRDLNTWNLTICVFSSPIVRSLLIVKLKDLIYSVYFAFEPN 312
+IY L R + + ++ R+ N LT V +RSL + S YF+ N
Sbjct: 616 TIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSG---SGYFSIIDN 672
Query: 311 GKQCSLISCLIPFL 270
K+C +I+ +P +
Sbjct: 673 PKECLMITMCLPMV 686
>02_01_0208 +
1397729-1397753,1397970-1398081,1398171-1398231,
1398495-1398788
Length = 163
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 167 NLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQAMKEKGLDTKL 295
+L + FY+D KL+ KK+ F ++ +KE +D L
Sbjct: 61 SLEKIQKFYDDTWKLINEDQEKKKAFMDYIRDNVKEAAVDDSL 103
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 347 DPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTK 526
DP + + +A +K I +LNS DL+ Q+E L+ ST +D K
Sbjct: 95 DPTVEIQELTAVIKKDI-TALNSAVVDLQVLC---NSQNESGNLSKDTTNHSTTVVDNLK 150
Query: 527 YRPVYAPKDFLEVL 568
R + A K+F EVL
Sbjct: 151 NRLMSATKEFKEVL 164
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 320 RTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQDELADKWNEL 499
+T+S +++ D +TSL++ K + + + + E S+ + PQS +WNEL
Sbjct: 589 QTESAKSERD-MTSLARMLEDLHK-FERHSSELVENKEVSIDVVAPQSSYSLWVKEWNEL 646
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 149 LAEEIKNLSIYKSFYNDVQKLVASPNVKKEDFKQTL-QQAMKEK 277
+A+ I N +++SF+ DVQK K D + Q AM E+
Sbjct: 441 VAKHIFNELVWRSFFQDVQKFPLQTTCKIHDLMHDIAQSAMGEE 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,805
Number of Sequences: 37544
Number of extensions: 251005
Number of successful extensions: 797
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -