Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c23
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-9|CAB05167.2|  252|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81083-5|CAB54248.1|  493|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    29   1.9  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     29   1.9  
Z69787-3|CAA93638.2|  537|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-bie...    28   4.4  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    28   5.9  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    27   7.7  

>Z82264-9|CAB05167.2|  252|Caenorhabditis elegans Hypothetical
           protein C49C3.15 protein.
          Length = 252

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +2

Query: 242 FKQTLQQAMKEKGLDTKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWEKRIHKSLNSMC 421
           F + LQ+   E+  D K + T+        K+N L  +  L +A  + EK+  +     C
Sbjct: 132 FHRKLQEVKNEQDADMKQKYTILENYSVMCKKNNLQLVAELKEAKCEIEKKTRE-----C 186

Query: 422 SDLETSLAKIRPQSE 466
           +DL+ + A  +  S+
Sbjct: 187 ADLKMAAAFYKSSSK 201


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 303 VFLNFVSNPFSFIACCSVCLKSSFFTFGDATSFCTS 196
           VF N V +P+S  +  S+    ++F  G+ TS CTS
Sbjct: 360 VFTNSVKSPYSLNSVISLKCDRNYFGTGNLTSTCTS 395


>Z81083-5|CAB54248.1|  493|Caenorhabditis elegans Hypothetical
           protein F44F1.6a protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -1

Query: 576 SVNKTSKKSFGA*TGRYFVKSKLYVLNSFHLSANSSCSLCGRIFANDVSRSEHMEFND-L 400
           S N+TS   F   TGRY     +    SF  ++N  CS C  + +      E+  ++  L
Sbjct: 220 SANRTSIHVFSKKTGRYLKYHYVINTGSFINTSNLDCSNCNSVTSEKYLLPEYSVYSKAL 279

Query: 399 CILFSHCALAFDSEVK 352
                HC     S+++
Sbjct: 280 DARVIHCTNNLTSDIE 295


>U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated
           protein 83, isoform c protein.
          Length = 740

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 SLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTKYR 532
           SL +MC+ L  SL  I+ +S    L D   ELS Y+  L + +
Sbjct: 602 SLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLK 644


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 SLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTKYR 532
           SL +MC+ L  SL  I+ +S    L D   ELS Y+  L + +
Sbjct: 837 SLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLK 879


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
            protein 83, isoform a protein.
          Length = 1041

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 404  SLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTKYR 532
            SL +MC+ L  SL  I+ +S    L D   ELS Y+  L + +
Sbjct: 903  SLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLK 945


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 404  SLNSMCSDLETSLAKIRPQSEQDELADKWNELSTYNLDLTKYR 532
            SL +MC+ L  SL  I+ +S    L D   ELS Y+  L + +
Sbjct: 903  SLETMCNYLTASLGSIQNESNSKNLPDFKAELSIYSNALARLK 945


>Z69787-3|CAA93638.2|  537|Caenorhabditis elegans Hypothetical
           protein C44C10.4 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 365 SKASAQWEK-RIHKS--LNSMCSDLETSLAKIRPQSEQDE 475
           S+A   WEK R+ +S   N+  + L+TSL++I  +  QDE
Sbjct: 388 SEARLNWEKLRVMRSARFNNFMAPLQTSLSRIYAEIAQDE 427


>U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-biedl
           syndrome) proteinprotein 2 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 453 RIFANDVSRSEHMEFNDLCILFSHCALAFDSEVKGSNLFCLLCVRTQWKTVFLNFVSNPF 274
           R+F ND+ R+E ME +++  L       F   +    +   +    QW+    + VS  F
Sbjct: 193 RVFKNDLMRTELMETDEITCLAHVANGCFAYSLNNGTIGTYVLKERQWRIKSKSNVSKIF 252

Query: 273 SF 268
           +F
Sbjct: 253 NF 254


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 531 RYFVKSKLYVLNSFHLSANSSCSLCGRIFANDVSRSEHM 415
           +Y +K+  Y +NS  +   +SC+   R+F  D S +E M
Sbjct: 558 QYVIKATAYKMNSVLIDDLASCATPTRVFFVDTSTTELM 596


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 531 RYFVKSKLYVLNSFHLSANSSCSLCGRIFANDVSRSEHM 415
           +Y +K+  Y +NS  +   +SC+   R+F  D S +E M
Sbjct: 558 QYVIKATAYKMNSVLIDDLASCATPTRVFFVDTSTTELM 596


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 531 RYFVKSKLYVLNSFHLSANSSCSLCGRIFANDVSRSEHM 415
           +Y +K+  Y +NS  +   +SC+   R+F  D S +E M
Sbjct: 558 QYVIKATAYKMNSVLIDDLASCATPTRVFFVDTSTTELM 596


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 468 CSLCGRIFANDVSRSEHMEFNDLCILFSHCALAFDSE 358
           C LCG+ +    +   HM  +   I   +C+L F SE
Sbjct: 60  CKLCGKAYKRKKNLDAHMALHLKEIQCDNCSLVFQSE 96


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 468 CSLCGRIFANDVSRSEHMEFNDLCILFSHCALAFDSE 358
           C LCG+ +    +   HM  +   I   +C+L F SE
Sbjct: 178 CKLCGKAYKRKKNLDAHMALHLKEIQCDNCSLVFQSE 214


>Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical
           protein T07F10.4a protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 476 IRPVRFVAVFSLMTFRDLNTWNLTICVFSSPIVRSLLIVKLKDLIYSVYFAFEPNGKQCS 297
           + P  F+ V +    RDL +W+    VFS+  +  L    L  L Y++Y    P   +  
Sbjct: 187 LAPYNFICVQAGYILRDLRSWD---DVFSTTTMLKLFSFALIPLAYAIY--IRPRANKHQ 241

Query: 296 LIS 288
           L+S
Sbjct: 242 LVS 244


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
            protein T07C4.10 protein.
          Length = 1013

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
 Frame = +2

Query: 107  DGVKEEVIHQTALKLAEEIKNLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQA------M 268
            D ++  ++    ++  E   +  I K     +++       KK ++   LQQ       M
Sbjct: 843  DELRHRIVQLDEIREVESSNSTKIEKGLREQLEQAQHELEKKKREYMWKLQQKDEFYEIM 902

Query: 269  KEKGLDTKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWE 388
                 +T+  N      RT+ K+   D + ++ KA  QW+
Sbjct: 903  DRNVKETEKENKRLLRKRTEDKERMDDFMLNIRKAQEQWK 942


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
            protein T07C4.10 protein.
          Length = 1013

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
 Frame = +2

Query: 107  DGVKEEVIHQTALKLAEEIKNLSIYKSFYNDVQKLVASPNVKKEDFKQTLQQA------M 268
            D ++  ++    ++  E   +  I K     +++       KK ++   LQQ       M
Sbjct: 843  DELRHRIVQLDEIREVESSNSTKIEKGLREQLEQAQHELEKKKREYMWKLQQKDEFYEIM 902

Query: 269  KEKGLDTKLRNTVFHWVRTQSKQNKLDPLTSLSKASAQWE 388
                 +T+  N      RT+ K+   D + ++ KA  QW+
Sbjct: 903  DRNVKETEKENKRLLRKRTEDKERMDDFMLNIRKAQEQWK 942


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,578
Number of Sequences: 27780
Number of extensions: 255713
Number of successful extensions: 897
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)