Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c23
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.0  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 KQNKLDPLTSLSK--ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQD 472
           K+  L+  TS  +   S + EK+ +K+ NS     ETS  + R + E++
Sbjct: 26  KEKLLEERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERE 74


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 KQNKLDPLTSLSK--ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQD 472
           K+  L+  TS  +   S + EK+ +K+ NS     ETS  + R + E++
Sbjct: 26  KEKLLEERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERE 74


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 KQNKLDPLTSLSK--ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQD 472
           K+  L+  TS  +   S + EK+ +K+ NS     ETS  + R + E++
Sbjct: 26  KEKLLEERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERE 74


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 KQNKLDPLTSLSK--ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQD 472
           K+  L+  TS  +   S + EK+ +K+ NS     ETS  + R + E++
Sbjct: 26  KEKLLEERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERE 74


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 KQNKLDPLTSLSK--ASAQWEKRIHKSLNSMCSDLETSLAKIRPQSEQD 472
           K+  L+  TS  +   S + EK+ +K+ NS     ETS  + R + E++
Sbjct: 259 KEKLLEERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERE 307


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 471 SCSLCGRIFANDVSRSEHM 415
           +C LCG++  +  S   H+
Sbjct: 7   TCQLCGKVLCSKASLKRHV 25


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 590 EHIRIVLTKLLKNLSERKLAGTLLNLNCMCSIHSIY 483
           +HI   L  L+ N  E    G  +N+N + +  S++
Sbjct: 891 KHILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVH 926


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,191
Number of Sequences: 438
Number of extensions: 2994
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)