Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c21
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0937 + 22801526-22802461                                         27   8.9  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    27   8.9  

>08_02_0937 + 22801526-22802461
          Length = 311

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 352 PLFC-RGRSWVVGVRRDIPHARPEEEGQVSARPP 254
           PLFC R R   +      P   PEEE +VS+ PP
Sbjct: 42  PLFCPRCRGEFLEEENPNPPPEPEEEEEVSSPPP 75


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 391 RCSEALEVRLYPE----PLFCRGRSWVVGVRRDIPHARPEEEGQVSARP 257
           RCS A+E++ YPE    P       + V +    P A PE   QV+ RP
Sbjct: 117 RCSRAVEIKTYPEFSAIPQSSSEDDFAVLIHLKAPCANPE---QVTGRP 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,271
Number of Sequences: 37544
Number of extensions: 266163
Number of successful extensions: 803
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)