Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c20
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 204 SKMPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFLGFVIGKINSDNQYTFFISNLLILL 383
           SK P ++   L+  P  IL S   Y+S+IG C+  + F     +    +T+ +  ++ L 
Sbjct: 121 SKEPGSSWGLLKD-PVFILLSASHYISIIGFCIPLMLFA----DFTGGFTYILMRVVFLF 175

Query: 384 GHLVA 398
           G L A
Sbjct: 176 GMLTA 180


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 204 SKMPQTNGCQLRTKPRIILSSIDFYLSVIGNCLVFLGFVIGKINSDNQYTFFISNLLILL 383
           SK P ++   L+  P  IL S   Y+S+IG C+  + F     +    +T+ +  ++ L 
Sbjct: 121 SKEPGSSWGLLKD-PVFILLSASHYISIIGFCIPLMLFA----DFTGGFTYILMRVVFLF 175

Query: 384 GHLVA 398
           G L A
Sbjct: 176 GMLTA 180


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/92 (27%), Positives = 35/92 (38%)
 Frame = +3

Query: 240 TKPRIILSSIDFYLSVIGNCLVFLGFVIGKINSDNQYTFFISNLLILLGHLVALMTELTT 419
           T+   I + + F+      C    GF  G    D QYT +   +  L   L     E  T
Sbjct: 253 TRSDYIQAFVTFFTVEFSKCHKKTGFSTGP---DVQYTHWKQTVFYLKDALTVKKGEEIT 309

Query: 420 LYEDYLCLKNGKRDYEINSYFTFANILSILGE 515
              +    KN +RD +IN  F F   +  L E
Sbjct: 310 GSFEMAPNKNNERDLDINISFDFKGEVCDLNE 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,863
Number of Sequences: 27780
Number of extensions: 324001
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)