Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c19
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    29   0.77 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.5  

>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 55  N*KQNTKELVNFKKKAKNSVKIGNHILAHCS-SHFINRQDNINNRCRRGLKDKTLDVFVS 231
           N K+ TKELV++ K       +GN +L      +F        NRC      +  D F S
Sbjct: 156 NGKEKTKELVDWVKAEYLDKGLGNDVLPRSKVENFFGEVPTSANRCIDLTDVRGNDDFFS 215

Query: 232 SDATVPVFKPHRQETFLNNSKKGEGSHA 315
           SD +   F     +TF  N K+  GS A
Sbjct: 216 SDLSADDF----AKTF-GNLKEISGSTA 238


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 307 SHATTFFSRVYTKVGTISITTTIDFRLLLLSIQL--PAAGV*DSNQILPFALVKKKN 471
           SH TT  S V +    +SIT+T++   LL   QL  P  GV  ++Q+  F++    N
Sbjct: 417 SHGTTHVSTVDSNNLAVSITSTVN---LLFGSQLMDPVTGVVFNDQMDDFSIPGASN 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,247
Number of Sequences: 5004
Number of extensions: 53787
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)