Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c19
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1196 + 24714626-24714649,24715034-24715297                       28   5.6  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    28   7.5  

>07_03_1196 + 24714626-24714649,24715034-24715297
          Length = 95

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 211 TLDVFVSSDATVPVFKPHRQETFLNNSKKGEGSHATTF 324
           T +VF++ D  V V K HRQ   L N+ +GE  H   F
Sbjct: 28  TRNVFMNPD--VRVNKSHRQSAVLENADEGEKYHHHAF 63


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 FLNNSKKGEGSHATTFF 327
           F NNS  GEGSHA  FF
Sbjct: 844 FSNNSLIGEGSHAKVFF 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,464
Number of Sequences: 37544
Number of extensions: 291782
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)