Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c19
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 79  LVNFKKKAKNSVKIGNHILAHCSSHFINRQDNINNRCRRGLKDK 210
           L N+K + +N V +   +L   S++   RQ N    CRR L  +
Sbjct: 332 LFNYKARYENDVSVEPRVLPTISAYSTTRQTNPKGGCRRRLSQE 375


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 64  QNTKELVNFKKKAKNSVKIGNHILAHCSSHFINRQDNINN 183
           Q  K++VNFKK     +   +  L + S HF N+Q NINN
Sbjct: 408 QFAKKVVNFKKLRSVDIDQLSEDLLN-SEHFQNQQVNINN 446


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 344 FVYTLEKKVVA*EPSPFFELFKKVSCLWGLNTGTVASLDTKTSSVLSFRPRRQRLLILSC 165
           FV  +  + V  +    F L  + +  W L T   ASLD  T+ + S    RQ  +I+ C
Sbjct: 203 FVLIIANQSVRNDKEVVFHLENEANVTWFLKTN--ASLDEITTELWSDEMARQAQIIIGC 260

Query: 164 L 162
           L
Sbjct: 261 L 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,654
Number of Sequences: 59808
Number of extensions: 357523
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)