Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c19
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   6.7  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   6.7  
Z81124-12|CAI46579.2|  489|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 61  KQNTKELVNFKKKAKNSVKIGNHILAHCSSHFINRQDNINNRCRRGLKDKT 213
           K+ T    N++ +    ++  +  L  CS+ +  RQD +N  C+  + DKT
Sbjct: 190 KKLTLNFFNYENQNSIQLEFNHDNLEICSAPWFTRQDLLNTNCQNLVIDKT 240


>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 579 SSFVFMLTNKTMSDCFAFLIDSGNFY 502
           S   F+LTNKT+ + F +L+  G F+
Sbjct: 196 SEVSFLLTNKTLKESFIWLVPIGAFH 221


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 462 FHQCKWENLIRVLHPSSG---*LDRKKKKTKINCG 367
           + Q  W+ +I    PSSG    L R K++ + NCG
Sbjct: 49  YEQIAWQAMIPTTRPSSGSSFLLGRNKRQAECNCG 83


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 462 FHQCKWENLIRVLHPSSG---*LDRKKKKTKINCG 367
           + Q  W+ +I    PSSG    L R K++ + NCG
Sbjct: 49  YEQIAWQAMIPTTRPSSGSSFLLGRNKRQAQCNCG 83


>Z81124-12|CAI46579.2|  489|Caenorhabditis elegans Hypothetical
           protein T21B4.17 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 139 HCSSHFINRQDNINNRCRRGLKDKTL 216
           HCS+   + + N+N+ C +G +D  L
Sbjct: 338 HCSTSDPSAESNLNSHCNKGARDAKL 363


>Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical
           protein F44F4.2 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 275 VSCLWGLN-TGTVASLDTKTSSVLSFRPRRQRLLILSCLFIK 153
           V C+ G + +GT+ S++T     +   P  + L++ SC+F++
Sbjct: 450 VQCIDGCSKSGTLVSIETALMHFIRGSPITKSLILQSCVFVR 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,890
Number of Sequences: 27780
Number of extensions: 303577
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)