Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c15
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   4.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.4  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   7.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.4  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 329 CLVSYPNSFAVEYKRGGLVTEYIKFSNITLQPVYVRLFKLIPELDQIK--FINLNLSCSK 502
           C++ Y N   + Y       EYI    +      VR+ +   +++ ++  +INL +  ++
Sbjct: 73  CIMDYHNDLFLTYSLSNAYREYIFDGGLPFSKHQVRVNRYQQKINDLRSAYINLCVPIAQ 132

Query: 503 RIPPGLSFNMAFIYNDANEK 562
            +  GL+     + N+  +K
Sbjct: 133 HVLMGLAKAKVIVCNEEADK 152


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 489 CLVQRGSLPVYHLIWPLFTMMQM 557
           C     S P +H+IW L++M ++
Sbjct: 413 CYSSHQSCPYFHIIWDLYSMSRL 435


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 559 KACLQC*LNLCSIKEDDDSV 618
           +A + C LNLCS+ E++D +
Sbjct: 197 RAAITCMLNLCSVVENNDII 216


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 77  KMNENQINVTNSNKTKS--RPLHGLKHLQEKCNID 175
           K  E+ ++V + NKT +   P HGLKH + K  ++
Sbjct: 22  KSAEDLLSVDSHNKTVTITPPKHGLKHSRHKNRVN 56


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 380 LVTEYIK--FSNITLQPVYV-RLFKLIPELDQIKFINLNLSCSK 502
           LVT+Y    +  +  Q +Y+  LF+ +PEL+ +     NL C +
Sbjct: 443 LVTDYFTSLWEFLGFQLIYMGELFEYVPELNSLLSPKYNLHCKR 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,141
Number of Sequences: 5004
Number of extensions: 47725
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)