Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c15
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    31   0.60 
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340...    31   1.0  
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427...    31   1.0  
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386...    31   1.0  
11_06_0513 + 24466131-24469487                                         28   7.4  
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386...    28   7.4  

>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 65  LHIIKMNENQINVTNSNKTKSRPLHGLKHLQEKCN 169
           L +I  +E QI  ++S + +SRPLHG  ++Q   N
Sbjct: 172 LPVISSSEKQIKNSSSQQGRSRPLHGASNVQSTEN 206


>04_04_1066 -
           30533114-30533185,30533507-30533614,30533716-30534091,
           30534173-30534330,30534416-30534536,30534613-30534831,
           30534923-30535022,30535254-30535383,30535474-30535617
          Length = 475

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 548 DANEKPACNANLICVASRKTTTPCYQICKI 637
           D +EK  C A +I +  RKT   CYQ CK+
Sbjct: 237 DKDEKYQCTATIIGIQERKTW--CYQACKL 264


>03_01_0579 -
           4274927-4274998,4275320-4275427,4275529-4275904,
           4275986-4276143,4276229-4276349,4276426-4276644,
           4276736-4276835,4276923-4277196,4277287-4277430
          Length = 523

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 548 DANEKPACNANLICVASRKTTTPCYQICKI 637
           D +EK  C A +I +  RKT   CYQ CK+
Sbjct: 285 DKDEKYQCTATIIGIQERKTW--CYQACKL 312


>01_01_0527 +
           3867621-3867764,3867855-3868128,3868216-3868315,
           3868407-3868625,3868702-3868822,3868908-3869065,
           3869147-3869522,3869624-3869731,3870053-3870124
          Length = 523

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 548 DANEKPACNANLICVASRKTTTPCYQICKI 637
           D +EK  C A +I +  RKT   CYQ CK+
Sbjct: 285 DKDEKYQCTATIIGIQERKTW--CYQACKL 312


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 86  ENQINVTNSN--KTKSRPLHGLKHLQEKCNIDSDVSNRK 196
           EN  N++N +  K + +  H L+HL   CN+D++  NRK
Sbjct: 814 ENIANISNEDAEKIQLQKKHELEHLTLNCNMDAE--NRK 850


>03_06_0015 -
           31036091-31036202,31037839-31037916,31038408-31038655,
           31038744-31038792,31038919-31039890,31040059-31040894
          Length = 764

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 62  VLHIIKMNENQINVTNSNKTKSRPLHGLKHLQEKCNIDS 178
           VLH  + N + IN+  S  +    LHGL   +E+  IDS
Sbjct: 220 VLHA-QFNSSVINIDGSAGSGMEKLHGLYECEEQMEIDS 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,473
Number of Sequences: 37544
Number of extensions: 261498
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)