Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c15
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    28   5.0  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 251 QCKTFIEISKYFSSPLRKTASYISENCLVSYPNSFAVEYKRG 376
           QCK F+    Y  +P     + I    +V  PN F + + RG
Sbjct: 313 QCKAFLRHKTYLVTPELLRQAGIPYATMVQRPNEFIITFPRG 354


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 407 NITLQPVYVRLFKLIPELDQIKFINLNLSCSKRIPPGLSFNMAFIYNDANEKPACNAN 580
           N T   VYV L K+   +  +K+I L + C + +   LS  +     D NE   C+++
Sbjct: 19  NDTFHQVYVPLLKITMNISLVKYICLLVYCIRSMQEHLS--VPTYCTDPNESFRCSSS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,895
Number of Sequences: 27780
Number of extensions: 259337
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)