Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c14
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    27   2.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   2.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   5.5  

>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 537 IPWDPMFLSYLEKIYNCQEPPPVTLKEEYNVFEERY 644
           + WD   L+  +K    Q+  PVT K+ Y    ERY
Sbjct: 47  VEWDDEHLALAKKCIEEQKLYPVTEKDAYMTHPERY 82


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/54 (18%), Positives = 24/54 (44%)
 Frame = +3

Query: 438 STAEFLLQNMKKFPMEVSLWSKEENLAFIGATFIPWDPMFLSYLEKIYNCQEPP 599
           S+    ++ +++ P          ++  I A   P DP+ + +L  ++ C + P
Sbjct: 247 SSTRITMEQIREHPFLSCFVHPNISIPIISAPIQPIDPLIVQHLSLVFRCSDDP 300


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 151 FYSRLSSKV*RVWLKADIWLLGVILQIYFLSNSKIRN 261
           FY    + V   W+ ++++L+G++L I  ++   I N
Sbjct: 786 FYKNFRTYVVLTWILSNLFLVGIVLSIPKINGISISN 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,086
Number of Sequences: 5004
Number of extensions: 47774
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)