Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte19c14
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical ...    32   0.31 
AF099920-6|AAQ01531.1|  388|Caenorhabditis elegans Hypothetical ...    32   0.31 
Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopam...    28   5.1  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    28   5.1  

>AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical
           protein H06H21.8a protein.
          Length = 336

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 394 LQNQPYSRANQYSSRVPQNFFYKI*RNFPWKFLFGVKKKIWLSLVLLSFPGILCFC---- 561
           +QN  +  A    +  P+ F     RN  W F + +K K      + +FPGI+C      
Sbjct: 192 MQNMMFEEALTLENVSPEVFGNDRIRNIKWSFDYSIKNKATAD-AISAFPGIICHADLNV 250

Query: 562 --LIWKKST 582
             ++WKK +
Sbjct: 251 TNVLWKKDS 259


>AF099920-6|AAQ01531.1|  388|Caenorhabditis elegans Hypothetical
           protein H06H21.8b protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 394 LQNQPYSRANQYSSRVPQNFFYKI*RNFPWKFLFGVKKKIWLSLVLLSFPGILCFC---- 561
           +QN  +  A    +  P+ F     RN  W F + +K K      + +FPGI+C      
Sbjct: 192 MQNMMFEEALTLENVSPEVFGNDRIRNIKWSFDYSIKNKATAD-AISAFPGIICHADLNV 250

Query: 562 --LIWKKST 582
             ++WKK +
Sbjct: 251 TNVLWKKDS 259


>Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical
           protein C06A1.2 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +1

Query: 91  CKKVYTHFNVFKKWPLAMPCFYSRLSSKV*RVWLKADIWLLGVILQIYFLSNSKIRNKCI 270
           C K+Y   N    +P A+  F+S++S  V  VWL+ ++  L   +  +FL  S     C+
Sbjct: 97  CFKIYIP-NFLNLFPSAL-LFFSQISMCV-VVWLEEEMGNLSKNMLFFFLPCSPSSILCL 153

Query: 271 *QCRNH 288
            +C +H
Sbjct: 154 FRCASH 159


>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 LAMPCFYSRLSSKV*RVW-LKADIWLLGVIL 225
           +++P  YSR S  V RVW L A IWL+ + L
Sbjct: 140 VSLPIQYSRQSQNVKRVWTLIAVIWLVSLTL 170


>Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical
           protein K09G1.4a protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 LAMPCFYSRLSSKV*RVW-LKADIWLLGVIL 225
           +++P  YSR S  V RVW L A IWL+ + L
Sbjct: 140 VSLPIQYSRQSQNVKRVWTLIAVIWLVSLTL 170


>AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopamine
           receptor shortvariant protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 LAMPCFYSRLSSKV*RVW-LKADIWLLGVIL 225
           +++P  YSR S  V RVW L A IWL+ + L
Sbjct: 140 VSLPIQYSRQSQNVKRVWTLIAVIWLVSLTL 170


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 136 LAMPCFYSRLSSKV*RVW-LKADIWLLGVIL 225
           +++P  YSR S  V RVW L A IWL+ + L
Sbjct: 140 VSLPIQYSRQSQNVKRVWTLIAVIWLVSLTL 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,541
Number of Sequences: 27780
Number of extensions: 257645
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)